Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialophora_20americana_20[genbank_20GCA_5F000835435.1_202015-02-23] 13 sequences; 31,616,172 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq4 167 3e-36 seq6 113 6e-20 >seq4 Length=4310093 Score = 167 bits (184), Expect = 3e-36 Identities = 566/873 (65%), Gaps = 14/873 (2%) Strand=Plus/Minus Query 69352 ATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAAC 69411 || || |||| || | ||| || ||||| |||| ||||| |||||||| || || | Sbjct 3511460 ATGGTGCCCAAGTTCTTCTGGTTGCTCTTCCTGTTGCAGGCATCCTTGTAGAGCATGTAG 3511401 Query 69412 GGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTATT 69471 |||||||| || || |||||| || | ||| | | ||| | | || || | Sbjct 3511400 GGAGTACCGGTCTCGGTCTGAGCCTCAAGAATCGCATACCACAGCTTCTGGGCCTTGA-- 3511343 Query 69472 ACGGTCTT---GTAACGCTTCTCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCT 69528 |||||| | ||| ||| ||||||||| || ||| | || ||||| Sbjct 3511342 -CGGTCTGACGGCCACGGCCCTCCTTTTCATATCTCTCGTAGAGCTCCTTAAACTCATCG 3511284 Query 69529 CCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCACACATCATCA 69588 || | |||||| ||| ||| || ||||| || || | | | ||| | | | Sbjct 3511283 CCGTAGACATCAGCCAGTCCTGGTGCTTCATGAGGGCAGAAAAGAGTCCATTCCTGGTTC 3511224 Query 69589 TCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATA-AAGAGATCTCTGGT 69647 | || || || | ||| || | || || |||| | ||| ||| || || || | || Sbjct 3511223 TTCTCGACACGCTCCATGAACAAGTCAGGGGTCCACATAGC-ATAGAACAGGTCACGGGC 3511165 Query 69648 TCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATG 69707 | |||||| || || || ||| | |||| | || || | | ||||| || Sbjct 3511164 ACGGACTTCTTCCTTGCCGTGGTTCTTTCTTAGATTCAAGAAGTCAAAGACATCAGCGTG 3511105 Query 69708 CCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTA 69767 |||||| || || || || || | | || ||||| || || || ||||| || | ||| Sbjct 3511104 CCATGGCTCCAGGTAGATGGCAAAAGCACCAGGTCGCTTGTTGCCGCCCTGGTCGACGTA 3511045 Query 69768 TCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGT 69827 | ||| || || || | || | || ||| ||||| | ||||| ||| | ||||| || Sbjct 3511044 GCGGGCCGTATTGTTGAAAACACGCAACATAGGAATGAGCCCATTTGATGTTCCATTAGT 3510985 Query 69828 TCCAGAAATATAACTTCCTCTTGCGCGAAT--ATTACTAATAGATAGACCTATTCCTCCT 69885 ||| | ||| || || |||| || || | | || || |||| || || || Sbjct 3510984 TCCTGCAATGTAGGAGCCAGTTGCACGGATGCAGTGGGCATTGA--GACCGATGCCACCA 3510927 Query 69886 GCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCA 69945 || | || ||||| | ||||| || | ||||||||| || ||||| ||||||||| Sbjct 3510926 GCGGTCTTGGAGATCATGGCACAGGTCTTGAGTGTGTCATAGATGCCCTCGATGCTATCA 3510867 Query 69946 TCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAAT 70005 || |||||| | | || ||| |||| || | ||| ||||| ||||| || Sbjct 3510866 TCCTTCATGTCGATCAAGAAGCAGGAGGACAGCTGGGGCTGTGGTGTTCCGGCATTGAAG 3510807 Query 70006 AATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCT 70065 | || || || || ||||| || || || | || | || |||||||| ||||| | Sbjct 3510806 AGCGTGGGTGACGCATGAGTAAAGCACTTCTGGGACATAAGGTTGTATGTCTCAATGGTC 3510747 Query 70066 GATTCTATATC-CCACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCG 70124 || ||||| ||| | || || || | || |||||||| | ||| ||||| ||||| Sbjct 3510746 TTCTCAATATCGTCACCG-TGGATACCAACAGCCACACGCATAATCATGTGCTGTGGTCG 3510688 Query 70125 TTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAA 70184 ||| | || || ||||||| ||||||||| || |||| || || || ||||| Sbjct 3510687 TTCGGCGACTTGCTTGCCGATTTTCAGCAGGTATGACTTCTCCAACGTCTTGAAACCAAA 3510628 Query 70185 ATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217 || | ||| ||||| || ||||| | ||| Sbjct 3510627 GTATTGGTAGTTGAAGTCCCTGTCGTAGACAAT 3510595 >seq6 Length=3486194 Score = 113 bits (124), Expect = 6e-20 Identities = 206/301 (68%), Gaps = 3/301 (1%) Strand=Plus/Minus Query 39637 GCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTT 39696 ||||||||| | | || | ||| || ||||| ||||| |||||||| || || | Sbjct 2268680 GCCCTCATCACGAGAGATGAGTTCATTTGAAAAGGTGAGACCAGGCATCAGGCCCTTGCT 2268621 Query 39697 TTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAA 39756 |||||||| || || |||||||| ||||||||||||||||| || || || ||||| || Sbjct 2268620 CTTGAGCCAGAAAATCGCAGCAAATGATCCAGAAAAGAAGATACCCTCGACGGCTGCGAA 2268561 Query 39757 TGCAACAAGTCTCTCTCCGTAACTTGTATCATTAT---GTATCCACTTCTGTGCCCAATC 39813 ||||| |||| | || || | | || |||| ||||| | | ||||| || Sbjct 2268560 AGCAACCAGTCGTTGAGCGAAAGTGGACTCCTTATCAGAGATCCATCTAAGAGCCCAGTC 2268501 Query 39814 AGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATAATGTTTTTCATC 39873 || ||||| | ||||| || || || ||||||| || || || || || | Sbjct 2268500 GGCCTTCTTGCGGATGCAAGGGATGGTGTCGATAGCATCGAACAGGTAGGTCTTCTCTTT 2268441 Query 39874 ACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAAT 39933 ||| | || ||||| || || | || |||||| || || |||||||| || || Sbjct 2268440 GGGATCGCTCACGTATGTGTCGATGAGGAGTGAATACATCTCGGAGTGGATGTTCTCCAT 2268381 Query 39934 C 39934 | Sbjct 2268380 C 2268380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686908688377320