Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialophora_20americana_20[genbank_20GCA_5F000835435.1_202015-02-23] 13 sequences; 31,616,172 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq4 228 1e-54 seq6 82.4 1e-10 >seq4 Length=4310093 Score = 228 bits (252), Expect = 1e-54 Identities = 1131/1774 (64%), Gaps = 39/1774 (2%) Strand=Plus/Minus Query 110331 TGAACTGAATTGGTCGGGCTTTCGCCTTTGATCGGAGATAGTACATCCCGGTCTTGAGTC 110390 |||||||||| ||| | | ||| | | ||||| |||||||| || || ||||| | Sbjct 3512446 TGAACTGAATGGGTTGTGTAGCGGCCATGGTGCGGAGGTAGTACATGCCAGTTTTGAGAC 3512387 Query 110391 CTTGTTTCCATGCGTACATATGCATAGAAGAGAGCTTGGACATCGTTGGACTTTCCATGA 110450 | |||||| || | ||||| || | || ||| ||| || || || || | Sbjct 3512386 CCATTTTCCAGCCGGCAAAGTGCATGGATGTGATTTTGCCCATGGTGGGTTCTTTCAAGT 3512327 Query 110451 AGAGGTTCATACTTTGACTTTGGTCAATGAAGCGCCCCCGTTGTGCCGCCATATCAATGA 110510 || ||||| ||| ||||| |||||| ||||| | |||||||| | | || Sbjct 3512326 GGATGTTCAAGGATTGGGACTGGTCGATGAAGGCGCCCCGATCGGCCGCCATCTGGAGGA 3512267 Query 110511 CA-TCCTTCATCTTAATTTCCCAAACTGTGCGATAGAGATTCTTGATATCATCTGGGATA 110569 | | | | || | ||||||| || || || || |||||| || | ||||| Sbjct 3512266 TAGTTCGTTGGCTGA-TTTCCCAGACAGTCTTGTACAGTGCCTTGATGTCGGCAGGGATG 3512208 Query 110570 TCTGAGATATTCTGGATGGAACCCCCCGCCTTCACCATGAGATCCTTCATATCCTTGGAC 110629 | | ||| ||||| | ||||| || | | || | | |||||| | | ||| Sbjct 3512207 TTGGGGATGTTCTGAACCGAACCACCGTCGGCGATGATACGGTTCTTCATGTTATCTGAC 3512148 Query 110630 CAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGCTTGTTGACAATGACAAACTCACCT 110689 |||||||| | | || || || | ||| | |||||| | |||||||| Sbjct 3512147 CAGAGACCCAGATCGACCAGATCCTTCAAGAGCCACGGGTTGACGACCTGGAACTCACCA 3512088 Query 110690 GCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCC 110749 || ||| | | ||||||||| | || ||||| ||||||||||| || || || Sbjct 3512087 GCCAGGACACGACGGGAGTAGATGTTGGAAGTATATGGCTCAAAGCATTCGTTGTTGCCA 3512028 Query 110750 AAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCC 110809 | || || | ||| || || || ||||| || || | | ||| ||| |||| ||| Sbjct 3512027 AGAATCTGGGAGGTTGACGCGGTAGGCATAGGAGCAACGAGGAGAGAGTTGCGAACACCA 3511968 Query 110810 TTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTA--GTTGAGCTTGGTTTCACCTT 110867 | || ||| |||| | | |||||||| | | | || | || | || || Sbjct 3511967 TACTTGGCAATGTCGGCCTTCAAAGAGTCCCAGTCCCACAGGTCAGATGGGGTG-ACATT 3511909 Query 110868 CCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGG 110927 || |||||||| |||| |||| ||||| || | || ||||| | || ||||| | Sbjct 3511908 CC-ACATGTCATACTGGAGCATGCCTTGTGAGACTGGGCTGCCCTCGTACGTCTCATATG 3511850 Query 110928 AACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAA 110987 ||||| | || | || || || || | || || || ||||| |||| Sbjct 3511849 TGCCTTGCTCCCTTGCAAGCTCGCACGAAGCAGTGAGAGCCGCATGGTAGATGGTCTCAA 3511790 Query 110988 AGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAA-AATA 111046 |||| | || | | || || || ||||| | | || ||| | || Sbjct 3511789 AGATCTGGATGTTGAGTTGTCGAGCCTCCGGAGAGTCAAAGG-GAAGACGCAGAGCAAGG 3511731 Query 111047 AATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTT 111106 || |||| || ||||||||||| || | |||||||||| || ||||||||| ||| Sbjct 3511730 AAGGCATCTGCAAGACCTTGAACCCCAAGGCCAATAGGTCGATGGCGCATATTACTCTTC 3511671 Query 111107 CGCGCAGTCTCA---ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTA 111163 ||| |||| |||||||| | || |||| |||| | ||| | ||| || Sbjct 3511670 TTCGC---CTCAGGGACGGGATAGTAGTTGATGTCGATGATTTTGTTCAAATTGCGTGTG 3511614 Query 111164 ACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACA 111223 || | | |||| |||||||| | | ||| | || | || | ||| Sbjct 3511613 ACCACTTGAGTGACCTCATGAAGGCGACCGAAGTCATACTCGCCACGAGATTGGTCGACG 3511554 Query 111224 TACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTAC 111283 | | |||||||| | || ||||||||||| ||||| ||| || | ||| || Sbjct 3511553 AAGGTGGGAAGGGCCAGGGAAGCCAAATTGCAGACAGCAACCTCGTCTGGCGCAGTGAAC 3511494 Query 111284 TCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTC 111343 || | || || || || | || || || ||| || ||||| ||||| ||||| ||| Sbjct 3511493 TCGACGATCTCGGTGCAAAGATTTGAGCTTCGAATGGTGCCCAAGTTCTTCTGGTTGCTC 3511434 Query 111344 TTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTG 111403 ||| ||||||| ||||||||||||||||||||||| || || ||||| ||||| | | Sbjct 3511433 TTCCTGTTGCAGGCATCCTTGTAGAGCATGTAGGGAGTACCGGTCTCGGTCTGAGCCTCA 3511374 Query 111404 AGAATAGCCTTCCA-AACATCGGCGGCTGGTACAATGGCGTTGGCC-CGTCCCTCCGCCT 111461 ||||| || | ||| | | || | | || | || | | |||| || |||||| | Sbjct 3511373 AGAATCGCATACCACAGCTTCTGGGCCTTG-ACGGT-CTGACGGCCACGGCCCTCCTTTT 3511316 Query 111462 CGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCT 111521 | || | |||||| | | |||||| || || | || | || |||||||| | Sbjct 3511315 CATATCTCTCGTAGAGCTCCTTAAACTCATCGCCGTAGACATCAGCCAGTCCTGGTGCTT 3511256 Query 111522 TGTCTGGACAGAAAAGAGACCATTGACCACCTTC--CTCAACCCGCTTCATGAAAAGGTC 111579 | || |||||||||| ||||| || ||| ||| || |||| |||||| | ||| Sbjct 3511255 CATGAGGGCAGAAAAGAGTCCATT--CCTGGTTCTTCTCGACACGCTCCATGAACAAGTC 3511198 Query 111580 TGGAATCCACAGGGATGAAAAGAGATCTC-TACACCGAGCCTCTTCGTCACCTTGGTTGA 111638 || |||||| | | || || || | ||| || | ||||| | || ||||| Sbjct 3511197 AGGGGTCCACATAGCATAGAACAGGTCACGGGCACGGA-CTTCTTCCTTGCCGTGGTTCT 3511139 Query 111639 GTCGTA-ACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGA-- 111695 || || | |||| ||| || | || ||| |||||||||||||| || |||| || | Sbjct 3511138 TTCTTAGATTCAA-GAAGTCAAAGACATCAGCGTGCCATGGCTCCAGGTAGATGGCAAAA 3511080 Query 111696 ----TAGATCCCTT-TCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATAC 111750 || || ||| | | ||||| || | || ||||| || || ||| || || Sbjct 3511079 GCACCAGGTCGCTTGTTGCCGCCC----TGGTCGACGTAGCGGGCCGTATTGTTGAAAAC 3511024 Query 111751 GCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATT 111810 || | ||| ||||| | |||| |||| ||||| || || ||| || | | Sbjct 3511023 ACGCAACATAGGAATGAGCCCATTTGATGTTCCATTAGTTCCTGCAATGTAGGAGCCAGT 3510964 Query 111811 GGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACA 111870 || | | ||| | | || || || ||||| ||| ||||| ||||| Sbjct 3510963 TGCACGGATGCAGTGGGCATTGAGACCGATGCCACCAGCGGTCTTGGAGATCATGGCACA 3510904 Query 111871 CTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCA 111930 | | || || ||||||| || | ||| || ||||| || |||| | |||||| Sbjct 3510903 GGTCTTGAGTGTGTCATAGATGCCCTCGATGCTATCATCCTTCATGTCGATCAAGAAGCA 3510844 Query 111931 ACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAA 111990 ||||| ||| || |||||| || ||||||||||| || |||| || ||| | || Sbjct 3510843 GGAGGACAGCTGGGGCTGTGGTGTTCCGGCATTGAAGAGCGTGGGTGACGCATGAGTAAA 3510784 Query 111991 -CATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGA 112049 || | |||||||| || ||||||||| | | ||||| || || ||||||| Sbjct 3510783 GCACTTC-TGGGACATAAGGTTGTATGTCTCAATGGTCTTCTCAATATCGTCACCGTGGA 3510725 Query 112050 TGCCGATTGCGACCCGCATGAACATGTACTGTGG 112083 | || | || || ||||| | ||||| |||||| Sbjct 3510724 TACCAACAGCCACACGCATAATCATGTGCTGTGG 3510691 >seq6 Length=3486194 Score = 82.4 bits (90), Expect = 1e-10 Identities = 115/159 (72%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| || ||| | |||||||| || || || ||||||||||| ||| ||||| Sbjct 2268697 GCAAAATCTGTGTGCATGCCCTCATCACGAGAGATGAGTTCATTTGAAAAGGTGAGACCA 2268638 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGAT 122777 ||||| || ||| |||| | ||| |||| || ||| ||||| || || |||||||| Sbjct 2268637 GGCATCAGGCCCTTGCTCTTGAGCCAGAAAATCGCAGCA-AATGATCCAGAAAAGAAGAT 2268579 Query 122778 ACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAA 122816 |||||| || || || |||| || |||| ||||| Sbjct 2268578 ACCCTCGACGGCTGCGAAAGCAACCAGTCGTTGAGCGAA 2268540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031897944800