Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialophora_20americana_20[genbank_20GCA_5F000835435.1_202015-02-23] 13 sequences; 31,616,172 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq5 152 2e-31 seq2 86.0 2e-11 >seq5 Length=3889323 Score = 152 bits (168), Expect = 2e-31 Identities = 177/236 (75%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| ||| |||||||| | | || || ||||| ||||| ||||||||||| ||||| | Sbjct 1366582 TTTGCATGCCACCACGGAGACGGAGGACGAGATGGAGAGTCGACTCTTTTTGGATATTGT 1366523 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || | || || || ||||||||||| |||||||||||||| ||||||||||||| Sbjct 1366522 AGTCGGAAAGGGTGCGGCCGTCTTCAAGTTGCTTTCCAGCAAAGATGAGACGTTGCTGAT 1366463 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGAT 140681 | |||||||| || || || || || || || ||| || || || || || | ||| Sbjct 1366462 CGGGAGGAATGCCCTCCTTGTCTTGGATCTT-GCTCTTGACGTTGTCGATGGTATCGCTC 1366404 Query 140682 GGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | || || ||||| || | ||||| ||||| || || || || || || ||||| Sbjct 1366403 GACTCGACCTCAAGGGTGATGGTCTTGCCGGTGAGAGTCTTGACGAAGATTTGCAT 1366348 Score = 131 bits (144), Expect = 5e-25 Identities = 172/236 (73%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| ||| |||||||| | | || || | || || || |||||||| || || || | Sbjct 1366354 TTTGCATGCCACCACGGAGACGGAGGACCAAGTGCAGTGTCGACTCTTTCTGGATGTTGT 1366295 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 |||| | || || ||||| || || ||||| ||||| ||||| || || ||||||| Sbjct 1366294 AATCGCTCAGGGTGCGGCCATCCTCGAGCTGTTTACCAGCGAAGATGAGGCGCTGCTGAT 1366235 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGAT 140681 |||||||||| ||||| || ||||| || || ||| || ||||| || || | || Sbjct 1366234 CAGGAGGAATGCCTTCCTTGTCCTGGATCTT-GCTCTTGACATTGTCGATGGTGTCGCTC 1366176 Query 140682 GGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | ||||| ||||| || | |||||| ||||| || || || || || |||||||| Sbjct 1366175 GACTCAACCTCAAGGGTGATTGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 1366120 Score = 120 bits (132), Expect = 9e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | ||| ||||| ||||| || || || || || || || || || || Sbjct 1366806 CATACCACCACGAAGTCTGAGAACGAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTC 1366747 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | ||||| || || ||||| || || || || ||||| | || ||||| || || Sbjct 1366746 TGAGAGCGTTCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCGGG 1366687 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || || |||||||| | || || || ||||| | ||| || | ||| Sbjct 1366686 TGGGATACCCTCCTTGTCTTGAATTTTCGACTTGACGTTGTCAATTGTATCCGAGGATTC 1366627 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || | ||||| || || || || || || || || ||||| Sbjct 1366626 GACCTCTAGCGTGATAGTCTTGCCCGTGAGGGTCTTCACGAAGATTTGCAT 1366576 >seq2 Length=5161063 Score = 86.0 bits (94), Expect = 2e-11 Identities = 178/265 (67%), Gaps = 0/265 (0%) Strand=Plus/Minus Query 378184 TCATATCTAACCATTAAATCTTCTAATGCTTTAATAAGTCGTCGAGAAATATAACCAGTT 378243 |||||| | || | | ||||| | || || | ||||| || |||||| || ||| Sbjct 252742 TCATATTTGACAGTGACTTCTTCAAGAGCCTTGACTAGTCGACGTTGAATATACCCCGTT 252683 Query 378244 TGACTAGTTTTAACTGCAGTATCAATTAAACCAACACGACCACCCATTGCATGGAAGAAT 378303 | || || || || ||||| || | ||| ||||||| |||| || |||||||| Sbjct 252682 TCGGCGGTCTTGACAGCTGTATCGATGAGACCCTCACGACCGGCCATGGCGTGGAAGAAG 252623 Query 378304 AATTCAGTAGGAGTAAGTCCACCAATAAATGAACTCTCAATAAATCCTCTTGCGCCTGGC 378363 || || || || || || || | || | || |||||| || ||||| | | | Sbjct 252622 AACTCCGTGGGTGTCAGACCCCGAAGGTAGGAGTTCTCAACGAAGCCTCTCGAGGGCGCA 252563 Query 378364 GAATCATCATATTTTGTATAATGAGGTAATGTACGATTCTCAAACCCATATGGAATTCGT 378423 |||| ||| | |||||| | ||||| | | |||| || || || | ||||| ||| Sbjct 252562 GAATAATCGTCCTTTGTAAAGTGAGGGAGACTGCGATACTTGAAGCCGAAGGGAATACGT 252503 Query 378424 TTTCCATCAACATTCTGTTGACCAA 378448 || || || ||| ||||||||||| Sbjct 252502 TTCCCTTCCACAGCCTGTTGACCAA 252478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515254147615439