Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phialophora_20americana_20[genbank_20GCA_5F000835435.1_202015-02-23]
13 sequences; 31,616,172 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq5 152 2e-31
seq2 86.0 2e-11
>seq5
Length=3889323
Score = 152 bits (168), Expect = 2e-31
Identities = 177/236 (75%), Gaps = 2/236 (1%)
Strand=Plus/Minus
Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562
||| ||| |||||||| | | || || ||||| ||||| ||||||||||| ||||| |
Sbjct 1366582 TTTGCATGCCACCACGGAGACGGAGGACGAGATGGAGAGTCGACTCTTTTTGGATATTGT 1366523
Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622
| || || | || || || ||||||||||| |||||||||||||| |||||||||||||
Sbjct 1366522 AGTCGGAAAGGGTGCGGCCGTCTTCAAGTTGCTTTCCAGCAAAGATGAGACGTTGCTGAT 1366463
Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGAT 140681
| |||||||| || || || || || || || ||| || || || || || | |||
Sbjct 1366462 CGGGAGGAATGCCCTCCTTGTCTTGGATCTT-GCTCTTGACGTTGTCGATGGTATCGCTC 1366404
Query 140682 GGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
| || || ||||| || | ||||| ||||| || || || || || || |||||
Sbjct 1366403 GACTCGACCTCAAGGGTGATGGTCTTGCCGGTGAGAGTCTTGACGAAGATTTGCAT 1366348
Score = 131 bits (144), Expect = 5e-25
Identities = 172/236 (73%), Gaps = 2/236 (1%)
Strand=Plus/Minus
Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562
||| ||| |||||||| | | || || | || || || |||||||| || || || |
Sbjct 1366354 TTTGCATGCCACCACGGAGACGGAGGACCAAGTGCAGTGTCGACTCTTTCTGGATGTTGT 1366295
Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622
|||| | || || ||||| || || ||||| ||||| ||||| || || |||||||
Sbjct 1366294 AATCGCTCAGGGTGCGGCCATCCTCGAGCTGTTTACCAGCGAAGATGAGGCGCTGCTGAT 1366235
Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGAT 140681
|||||||||| ||||| || ||||| || || ||| || ||||| || || | ||
Sbjct 1366234 CAGGAGGAATGCCTTCCTTGTCCTGGATCTT-GCTCTTGACATTGTCGATGGTGTCGCTC 1366176
Query 140682 GGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
| ||||| ||||| || | |||||| ||||| || || || || || ||||||||
Sbjct 1366175 GACTCAACCTCAAGGGTGATTGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 1366120
Score = 120 bits (132), Expect = 9e-22
Identities = 165/231 (71%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | ||| ||||| ||||| || || || || || || || || || ||
Sbjct 1366806 CATACCACCACGAAGTCTGAGAACGAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTC 1366747
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
|| | ||||| || || ||||| || || || || ||||| | || ||||| || ||
Sbjct 1366746 TGAGAGCGTTCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCGGG 1366687
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
|| || || || || || |||||||| | || || || ||||| | ||| || | |||
Sbjct 1366686 TGGGATACCCTCCTTGTCTTGAATTTTCGACTTGACGTTGTCAATTGTATCCGAGGATTC 1366627
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| || || || | ||||| || || || || || || || || |||||
Sbjct 1366626 GACCTCTAGCGTGATAGTCTTGCCCGTGAGGGTCTTCACGAAGATTTGCAT 1366576
>seq2
Length=5161063
Score = 86.0 bits (94), Expect = 2e-11
Identities = 178/265 (67%), Gaps = 0/265 (0%)
Strand=Plus/Minus
Query 378184 TCATATCTAACCATTAAATCTTCTAATGCTTTAATAAGTCGTCGAGAAATATAACCAGTT 378243
|||||| | || | | ||||| | || || | ||||| || |||||| || |||
Sbjct 252742 TCATATTTGACAGTGACTTCTTCAAGAGCCTTGACTAGTCGACGTTGAATATACCCCGTT 252683
Query 378244 TGACTAGTTTTAACTGCAGTATCAATTAAACCAACACGACCACCCATTGCATGGAAGAAT 378303
| || || || || ||||| || | ||| ||||||| |||| || ||||||||
Sbjct 252682 TCGGCGGTCTTGACAGCTGTATCGATGAGACCCTCACGACCGGCCATGGCGTGGAAGAAG 252623
Query 378304 AATTCAGTAGGAGTAAGTCCACCAATAAATGAACTCTCAATAAATCCTCTTGCGCCTGGC 378363
|| || || || || || || | || | || |||||| || ||||| | | |
Sbjct 252622 AACTCCGTGGGTGTCAGACCCCGAAGGTAGGAGTTCTCAACGAAGCCTCTCGAGGGCGCA 252563
Query 378364 GAATCATCATATTTTGTATAATGAGGTAATGTACGATTCTCAAACCCATATGGAATTCGT 378423
|||| ||| | |||||| | ||||| | | |||| || || || | ||||| |||
Sbjct 252562 GAATAATCGTCCTTTGTAAAGTGAGGGAGACTGCGATACTTGAAGCCGAAGGGAATACGT 252503
Query 378424 TTTCCATCAACATTCTGTTGACCAA 378448
|| || || ||| |||||||||||
Sbjct 252502 TTCCCTTCCACAGCCTGTTGACCAA 252478
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515254147615439
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |