Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialophora_20americana_20[genbank_20GCA_5F000835435.1_202015-02-23] 13 sequences; 31,616,172 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq4 215 6e-51 seq5 93.3 5e-14 >seq4 Length=4310093 Score = 215 bits (238), Expect = 6e-51 Identities = 502/752 (67%), Gaps = 4/752 (1%) Strand=Plus/Plus Query 53195 ATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGT-GAGACGTACGA 53253 ||||| || || | ||||||||||||||||| || | || | ||||| ||| | Sbjct 3510706 ATGCGTGTGGCTGTTGGTATCCACGGTGACGA-TATTGAGAAGACCATTGAGACATACAA 3510764 Query 53254 CTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAA 53313 | | ||| ||| |||| |||||| || || | || || || ||||| || || || Sbjct 3510765 CCTTATGTCCCAGAAGTGCTTTACTCATGCGTCACCCACGCTCTTCAATGCCGGAACACC 3510824 Query 53314 TCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCAT 53373 || || ||| |||| ||||||| || | | ||||||||||| ||||| ||||| Sbjct 3510825 ACAGCCCCAGCTGTCCTCCTGCTTCTTGATCGACATGAAGGATGATAGCATCGAGGGCAT 3510884 Query 53374 CTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCA 53433 ||| || || |||||| |||||| ||||||||| | ||||| |||||| || | Sbjct 3510885 CTATGACACACTCAAGACCTGTGCCATGATCTCCAAGACCGCTGGTGGCATCGGTCTCAA 3510944 Query 53434 CTGCTCGAA-CGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATG 53492 ||| | | ||||||| | ||| | || || || || || | ||| Sbjct 3510945 -TGCCCACTGCATCCGTGCAACTGGCTCCTACATTGCAGGAACTAATGGAACATCAAATG 3511003 Query 53493 GAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTG 53552 | || | |||||| | || || |||||||| |||||||| |||||| ||||||| || Sbjct 3511004 GGCTCATTCCTATGTTGCGTGTTTTCAACAATACGGCCCGCTACGTCGACCAGGGCGGCA 3511063 Query 53553 GGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGT 53612 ||||| || | || ||||||||||| ||||| |||||||| || | | || | Sbjct 3511064 ACAAGCGACCTGGTGCTTTTGCCATCTACCTGGAGCCATGGCACGCTGATGTCTTTGACT 3511123 Query 53613 TTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACAG 53672 | | | || | ||| || || | ||||| | || |||||||||||| | Sbjct 3511124 TCTTGAATCTAAGAAAGAACCACGGCAAGGAAGAAGTCCGTGCCCGTGACCTGTTCTATG 3511183 Query 53673 CTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGA 53732 || |||||| || ||| | |||||| | || |||||| || |||| ||| || Sbjct 3511184 CTATGTGGACCCCTGACTTGTTCATGGAGCGTGTCGAGAAGAACCAGGAATGGACTCTTT 3511243 Query 53733 TGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGATGT 53792 | ||||| | || || || || | ||||||||| || |||||||| ||| | | Sbjct 3511244 TCTGCCCTCATGAAGCACCAGGACTGGCTGATGTCTACGGCGATGAGTTTAAGGAGCTCT 3511303 Query 53793 ATCGGACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGGG 53852 | || || | | ||||||| | ||| |||||||| | || | ||| Sbjct 3511304 ACGAGAGATATGAAAAGGAGGGCCGTGGCCGTCAGACCGTCAAGGCCCAGAAGCTGTGGT 3511363 Query 53853 ATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCGG 53912 |||| || || || ||| ||||| || || || |||||| |||||||||| | Sbjct 3511364 ATGCGATTCTTGAGGCTCAGACCGAGACCGGTACTCCCTACATGCTCTACAAGGATGCCT 3511423 Query 53913 TCAACGAGAAGAGCAACCAGAAGAACATCGGC 53944 |||| ||||||||||||||||||| | ||| Sbjct 3511424 GCAACAGGAAGAGCAACCAGAAGAACTTGGGC 3511455 Score = 89.7 bits (98), Expect = 6e-13 Identities = 303/457 (66%), Gaps = 29/457 (6%) Strand=Plus/Plus Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543 |||||||| || ||||| || || ||||| |||||||| || | ||||| | |||||| Sbjct 3511975 CGCAACTCTCTCCTCGTTGCTCCTATGCCTACCGCGTCAACCTCCCAGATTCTTGGCAAC 3512034 Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAG 55603 ||||| || ||||| || || ||||||||||| || || ||| || |||||| Sbjct 3512035 AACGAATGCTTTGAGCCATATACTTCCAACATCTACTCCCGTCGTGTCCTGGCTGGTGAG 3512094 Query 55604 TTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACCCG 55663 || | ||||| | ||| | ||||| ||| | |||| ||| | | Sbjct 3512095 TTCCAGGTCGTCAACCCGTGGCTCTTGAAGGATCTG--GTCGATC------TGGGTCTCT 3512146 Query 55664 ---CAGAT--CAAGACGGA---TATTGT-GCGGAACGGGGGGTCCGTCCAGAA--TCTGG 55712 ||||| || || | | ||| | || || ||| || || || ||||| || Sbjct 3512147 GGTCAGATAACATGAAGAACCGTATCATCGCCGA-CGGTGGTTCGGTTCAGAACATCCCC 3512205 Query 55713 AGATTCCTCTGC-GTC-TCAAGGAGATTTACCGGACGGTGTGGGAGATT--CCACAGAAG 55768 | ||| |||| | | |||||| | ||| ||| || ||||| || ||| ||| Sbjct 3512206 AACATCC-CTGCCGACATCAAGGCACTGTACAAGACTGTCTGGGAAATCAGCCAACGAAC 3512264 Query 55769 AGTCTGATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAAC 55828 || | | ||| || ||||| || || | ||||||||||||||| || ||||| Sbjct 3512265 TATCC--TCCAGATGGCGGCCGATCGGGGCGCCTTCATCGACCAGTCCCAATCCTTGAAC 3512322 Query 55829 ATCTTCATG-GAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAA 55887 ||| | || |||| || || ||| ||| | | || ||||||||| ||| ||||| Sbjct 3512323 ATCCACTTGAAAGAACCCACCA-TGGGCAAAATCACATCCATGCACTTTGCCGGCTGGAA 3512381 Query 55888 GAAGGGACTCAAGACGGGTATGTACTATCTGCGGACC 55924 | ||| ||||| || || |||||||| || || ||| Sbjct 3512382 AATGGGTCTCAAAACTGGCATGTACTACCTCCGCACC 3512418 >seq5 Length=3889323 Score = 93.3 bits (102), Expect = 5e-14 Identities = 171/251 (68%), Gaps = 0/251 (0%) Strand=Plus/Minus Query 152074 CGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTC 152133 || || ||||| || || || ||||| || ||||||| |||||| | || |||||| | Sbjct 3467919 CGAGTACCAAATTGGCCTGATGGCTCAAGCAGGTTGATGTTGTTCGATCCGACGAAAGTT 3467860 Query 152134 TGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGC 152193 ||||||||| ||||| || || ||| | || ||||||||||| || ||| Sbjct 3467859 TGAGCCAAACCGACAATTGTCTGTTGAAGAGAAGTCTCGCCGTGGTGATAAGCGGTCATT 3467800 Query 152194 TCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGA 152253 | | | ||||||| | || || ||||| ||| || ||||||| ||| | Sbjct 3467799 CCACCCACCAGACCCGCCAGTTCAGCGACTTTCATATCCTTCTTCAGGTTACGCTTAAAG 3467740 Query 152254 CAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAA 152313 || || || || ||||| |||||| || || | ||||| || ||| |||||| || Sbjct 3467739 CATGCATACATGACCTTTCGCTGGCCGGGCTTTAGGCCGTCGACGACGGAAGGAATGGAC 3467680 Query 152314 CGCTTGATGTC 152324 || || |||| Sbjct 3467679 CGGATGTTGTC 3467669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215911077400