Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialophora_20americana_20[genbank_20GCA_5F000835435.1_202015-02-23] 13 sequences; 31,616,172 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq5 129 4e-25 >seq5 Length=3889323 Score = 129 bits (142), Expect = 4e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | || | || ||||| || | |||||||||||| |||||||| || || || Sbjct 1367030 CCGCCACGCAGTCTCAGCACCAGGTGCAAAGTGCTCTCCTTCTGAATGTTGTAGTCGGAC 1366971 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || ||||| |||||||||| || || ||||| || || || | ||| ||||| || || Sbjct 1366970 AGCGTTCGGCCGTCTTCAAGCTGCTTGCCGGCGAAGATCAATCTCTGCTGGTCGGGTGGG 1366911 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| |||| || | || || | ||| |||||| |||||| || Sbjct 1366910 ATGCCCTCCTTGTCCTGGATC-TTCGACTTGACATTGTCAATGGTGTCTGAGCTCTCAAC 1366852 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| || || || || ||||| || || || || || |||||||| Sbjct 1366851 TTCCAATGTAATGGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 1366804 Score = 89.7 bits (98), Expect = 3e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | || | ||||||||| ||| ||||| || || || || ||||| || || Sbjct 1366565 AGACGGAGGACGAGATGGAGAGTCGACTCTTTTTGGATATTGTAGTCGGAAAGGGTGCGG 1366506 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 ||||||||||||| || || ||||| || | ||| || || || || || | |||||| Sbjct 1366505 CCGTCTTCAAGTTGCTTTCCAGCAAAGATGAGACGTTGCTGATCGGGAGGAATGCCCTCC 1366446 Query 34609 TTGTCTGTGATCTT 34622 |||||| |||||| Sbjct 1366445 TTGTCTTGGATCTT 1366432 Score = 89.7 bits (98), Expect = 3e-13 Identities = 145/206 (70%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 34503 ATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTG 34562 |||||| ||| ||||| || ||||| || ||||| || ||||| |||| ||||| || Sbjct 1366779 ATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCTGAGAGCGTTCGGCCGTCCTCAAGCTG 1366720 Query 34563 TTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT 34622 || ||||| || || || ||||| ||||| || || | |||||||||||| ||| || Sbjct 1366719 CTTGCCGGCGAAGATCAATCGCTGCTGGTCGGGTGGGATACCCTCCTTGTCT-TGAATTT 1366661 Query 34623 TTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGG 34681 | | || ||| | |||||| || | || || || | || || || || || | Sbjct 1366660 TCGACTTGACGTTGTCAATTGTATCCGAGGATTCGACCTCTAGCGTGATAGTCTTGCCCG 1366601 Query 34682 TTAACGTTTTCACAAAAATCTGCATG 34707 | | || ||||| || || |||||| Sbjct 1366600 TGAGGGTCTTCACGAAGATTTGCATG 1366575 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314729550135029