Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phialophora_20americana_20[genbank_20GCA_5F000835435.1_202015-02-23]
13 sequences; 31,616,172 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq5 163 7e-35
seq4 105 2e-17
>seq5
Length=3889323
Score = 163 bits (180), Expect = 7e-35
Identities = 166/215 (77%), Gaps = 6/215 (3%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| | ||| || || |||||||| |||||||| ||||| ||||| | |||||
Sbjct 1366331 AGGACCAAGTGCAGTGTCGACTCTTTCTGGATGTTGTAATCGCTCAGGGTGCGGCCATCC 1366272
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| ||||| || || |||||||| ||||| || || |||||||||| ||||||||||||
Sbjct 1366271 TCGAGCTGTTTACCAGCGAAGATGAGGCGCTGCTGATCAGGAGGAATGCCTTCCTTGTCC 1366212
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATC 211079
|||||||| || || || ||||||||||| ||| |||||||| || |||||
Sbjct 1366211 TGGATCTTGCTCTTGACATTGTCGATGGTGTC---GCTCGACTCAACCTCAAGGGTGATT 1366155
Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||||| || ||||| ||||| || || | ||||||
Sbjct 1366154 GTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 1366120
Score = 150 bits (166), Expect = 4e-31
Identities = 163/215 (76%), Gaps = 6/215 (3%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| || || ||||| |||||||||||||| || || || | |||||| | || |||
Sbjct 1366559 AGGACGAGATGGAGAGTCGACTCTTTTTGGATATTGTAGTCGGAAAGGGTGCGGCCGTCT 1366500
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| || ||||| || || ||||| || ||||| || || ||||||| || ||||||||
Sbjct 1366499 TCAAGTTGCTTTCCAGCAAAGATGAGACGTTGCTGATCGGGAGGAATGCCCTCCTTGTCT 1366440
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTCGAGAGTGATC 211079
|||||||| || ||||| |||||||| || ||| || ||||| || |||||
Sbjct 1366439 TGGATCTTGCTCTTGACGTTGTCGATGGTATC---GCTCGACTCGACCTCAAGGGTGATG 1366383
Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||||| || ||||||||||| || || | |||||
Sbjct 1366382 GTCTTGCCGGTGAGAGTCTTGACGAAGATTTGCAT 1366348
Score = 134 bits (148), Expect = 3e-26
Identities = 163/222 (73%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
||||||||| || || || || || ||||| || || |||||||| || || | || ||
Sbjct 1366797 ACGAAGTCTGAGAACGAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCTGAGAGCGT 1366738
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
| || || || ||||||||||| |||||||| | || || ||||| || || | ||
Sbjct 1366737 TCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCGGGTGGGATACC 1366678
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
|||||||| || || || || ||||| || || || || ||| ||| ||||| ||
Sbjct 1366677 CTCCTTGTCTTGAATTTTCGACTTGACGTTGTCAATTGTATCCGAGGATTCGACCTCTAG 1366618
Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||||| ||||| |||||||| ||||| || || | |||||
Sbjct 1366617 CGTGATAGTCTTGCCCGTGAGGGTCTTCACGAAGATTTGCAT 1366576
Score = 131 bits (144), Expect = 4e-25
Identities = 162/222 (73%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
||| ||||| || || ||||| | |||| ||| || || ||||| || || | || ||
Sbjct 1367025 ACGCAGTCTCAGCACCAGGTGCAAAGTGCTCTCCTTCTGAATGTTGTAGTCGGACAGCGT 1366966
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
| || ||||| ||||||||||| |||||||| | | || ||||| || || | ||
Sbjct 1366965 TCGGCCGTCTTCAAGCTGCTTGCCGGCGAAGATCAATCTCTGCTGGTCGGGTGGGATGCC 1366906
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
||||||||||||||||| || || || || |||||||| ||||| ||||| || |
Sbjct 1366905 CTCCTTGTCCTGGATCTTCGACTTGACATTGTCAATGGTGTCTGAGCTCTCAACTTCCAA 1366846
Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| || ||||| || || | ||||| || || | ||||||
Sbjct 1366845 TGTAATGGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 1366804
>seq4
Length=4310093
Score = 105 bits (116), Expect = 2e-17
Identities = 190/278 (68%), Gaps = 0/278 (0%)
Strand=Plus/Minus
Query 178088 CCAAAGTTCTTTTGGTTGCTCTTTCTGCAAATGGCATCTTTGTACGCAATGAAGGGCATT 178147
|| |||||||| ||||||||||| ||| |||||| ||||| ||| |||| |
Sbjct 3511454 CCCAAGTTCTTCTGGTTGCTCTTCCTGTTGCAGGCATCCTTGTAGAGCATGTAGGGAGTA 3511395
Query 178148 CCCACCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTCTTT 178207
|| ||| | |||||| | ||||| || ||| |||| |||||| ||| ||||
Sbjct 3511394 CCGGTCTCGGTCTGAGCCTCAAGAATCGCATACCACAGCTTCTGGGCCTTGACGGTCTGA 3511335
Query 178208 TTGGCTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAGACA 178267
| | || || || || || | | ||||||||||| || || || ||||||
Sbjct 3511334 CGGCCACGGCCCTCCTTTTCATATCTCTCGTAGAGCTCCTTAAACTCATCGCCGTAGACA 3511275
Query 178268 TCATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCTTCACT 178327
||| | || || || || |||| |||||||| ||| |||| | || | || ||
Sbjct 3511274 TCAGCCAGTCCTGGTGCTTCATGAGGGCAGAAAAGAGTCCATTCCTGGTTCTTCTCGACA 3511215
Query 178328 CGTTTCATGAAGAGGTCAGAGGTCCAGATGGCATAGAA 178365
|| | |||||| | ||||| |||||| || ||||||||
Sbjct 3511214 CGCTCCATGAACAAGTCAGGGGTCCACATAGCATAGAA 3511177
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159151806928745
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |