Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialophora_20americana_20[genbank_20GCA_5F000835435.1_202015-02-23] 13 sequences; 31,616,172 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq5 102 6e-17 seq1 93.3 3e-14 >seq5 Length=3889323 Score = 102 bits (112), Expect = 6e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || |||||||| || || || ||||| || || ||||| || | Sbjct 1366120 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACAATCACCCTTGAGGTTGAGTCGAGC 1366179 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || | | ||||| ||||| | || || ||||| Sbjct 1366180 GACACCATCGACAATGTCAAGAGCAAGA-TCCAGGACAAGGAAGGCATTCCTCCTGATCA 1366238 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| | || || || || ||||| || || || | ||||| | |||||||||| Sbjct 1366239 GCAGCGCCTCATCTTCGCTGGTAAACAGCTCGAGGATGGCCGCACCCTGAGCGATTACAA 1366298 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819 ||| || |||||||| ||| | || || || Sbjct 1366299 CATCCAGAAAGAGTCGACACTGCACTTGGT 1366328 Score = 95.1 bits (104), Expect = 8e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || ||||||||||| || || ||||| || || || || ||| || Sbjct 1366576 ATGCAAATCTTCGTGAAGACCCTCACGGGCAAGACTATCACGCTAGAGGTCGAATCCTCG 1366635 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||| | | || |||||| ||||| || ||| | || || || || Sbjct 1366636 GATACAATTGACAACGTCAAGTCGAAAATTCAAGACAAGGAGGGTATCCCACCCGACCAG 1366695 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| || || || |||||||| || || || |||| || || | || |||||| Sbjct 1366696 CAGCGATTGATCTTCGCCGGCAAGCAGCTTGAGGACGGCCGAACGCTCTCAGACTACAAC 1366755 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820 || || || || ||||| | ||| | ||| Sbjct 1366756 ATCCAGAAGGAATCCACCCTCCATCTCGTT 1366785 >seq1 Length=6061779 Score = 93.3 bits (102), Expect = 3e-14 Identities = 130/180 (72%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 23620 TTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTT 23679 ||||| || ||||||||||| || || ||||| ||||| || || ||| | ||||| | Sbjct 4126399 TTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAATCCTCAGACACAATC 4126340 Query 23680 GA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTT 23738 || ||| | ||| | || || ||||| || || | || || || || ||||| | Sbjct 4126339 GACAATGTCAAATC-CAAGATCCAAGACAAGGAGGGCATCCCACCCGACCAGCAGCGACT 4126281 Query 23739 AATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAA 23798 || || |||||||| ||||| ||||||| || || || |||| ||||| || ||||| Sbjct 4126280 GATCTTCGCCGGCAAGCAACTCGAAGACGGCCGTACGTTGAGCGACTACAATATCCAAAA 4126221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338009546446604