Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialophora_20americana_20[genbank_20GCA_5F000835435.1_202015-02-23] 13 sequences; 31,616,172 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq5 149 1e-30 seq1 134 3e-26 >seq5 Length=3889323 Score = 149 bits (164), Expect = 1e-30 Identities = 166/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||||||||| || || || ||||| |||||||| || |||| ||||| || | | || Sbjct 1366797 ACGAAGTCTGAGAACGAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCTGAGAGCGT 1366738 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 || || || || |||||||| || |||||||| | ||| || |||||||| || ||||| Sbjct 1366737 TCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCGGGTGGGATACC 1366678 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||||| || || ||| || || || || || |||| ||| || |||| Sbjct 1366677 CTCCTTGTCTTGAATTTTCGACTTGACGTTGTCAATTGTATCCGAGGATTCGACCTCTAG 1366618 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||| ||||||||||| | || || | ||| | |||||| Sbjct 1366617 CGTGATAGTCTTGCCCGTGAGGGTCTTCACGAAGATTTGCAT 1366576 Score = 143 bits (158), Expect = 6e-29 Identities = 165/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| |||||||| || ||||| | |||| || || || | ||||| |||| || || Sbjct 1367025 ACGCAGTCTCAGCACCAGGTGCAAAGTGCTCTCCTTCTGAATGTTGTAGTCGGACAGCGT 1366966 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 || || ||||| |||||||| || |||||||| | || || |||||||| || || || Sbjct 1366965 TCGGCCGTCTTCAAGCTGCTTGCCGGCGAAGATCAATCTCTGCTGGTCGGGTGGGATGCC 1366906 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| |||||||| ||| ||| || |||||||||||| | || || || || Sbjct 1366905 CTCCTTGTCCTGGATCTTCGACTTGACATTGTCAATGGTGTCTGAGCTCTCAACTTCCAA 1366846 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || |||||||| ||||| || || | ||| | ||||| Sbjct 1366845 TGTAATGGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 1366804 Score = 140 bits (154), Expect = 8e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| || |||||||| || |||||||||| |||||| |||| | || | || ||| Sbjct 1366559 AGGACGAGATGGAGAGTCGACTCTTTTTGGATATTGTAGTCGGAAAGGGTGCGGCCGTCT 1366500 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || ||||| ||||| ||||| || ||||| || ||||| ||||| || ||||||||| Sbjct 1366499 TCAAGTTGCTTTCCAGCAAAGATGAGACGTTGCTGATCGGGAGGAATGCCCTCCTTGTCT 1366440 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || |||||||| || | || || || | ||||| ||| Sbjct 1366439 TGGATCTTGCTCTTGACGTTGTCGATGGTATCGCTCGACTCGACCTCAAGGGTGATGGTC 1366380 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || | ||| || | ||| | |||||| Sbjct 1366379 TTGCCGGTGAGAGTCTTGACGAAGATTTGCAT 1366348 Score = 122 bits (134), Expect = 2e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | ||| || || || ||||| |||| ||||||||| || || | ||||| Sbjct 1366331 AGGACCAAGTGCAGTGTCGACTCTTTCTGGATGTTGTAATCGCTCAGGGTGCGGCCATCC 1366272 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || ||||| || ||||||||||| || || || || || || ||||| ||||||||||| Sbjct 1366271 TCGAGCTGTTTACCAGCGAAGATGAGGCGCTGCTGATCAGGAGGAATGCCTTCCTTGTCC 1366212 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| ||| ||||||||||| | || || || | ||||| ||| Sbjct 1366211 TGGATCTTGCTCTTGACATTGTCGATGGTGTCGCTCGACTCAACCTCAAGGGTGATTGTC 1366152 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || | || || | ||| | ||||| Sbjct 1366151 TTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 1366120 >seq1 Length=6061779 Score = 134 bits (148), Expect = 3e-26 Identities = 128/164 (78%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585 ||||||| |||||| ||| ||| || | || ||||| || ||||| || |||||||| Sbjct 4126221 TTTTGGATATTGTAGTCGCTCAACGTACGGCCGTCTTCGAGTTGCTTGCCGGCGAAGATC 4126280 Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645 ||||| || |||||||| || || || ||||||||||||||||| || ||| ||| Sbjct 4126281 AGTCGCTGCTGGTCGGGTGGGATGCCCTCCTTGTCTTGGATCTTGGATTTGACATTGTCG 4126340 Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 || |||||||||| ||| || || | ||||| ||||||||||| Sbjct 4126341 ATTGTGTCTGAGGATTCGACCTCGAGGGTGATGGTCTTGCCCGT 4126384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192531001369022