Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialophora_20americana_20[genbank_20GCA_5F000835435.1_202015-02-23] 13 sequences; 31,616,172 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq4 172 8e-38 seq6 102 1e-16 >seq4 Length=4310093 Score = 172 bits (190), Expect = 8e-38 Identities = 583/898 (65%), Gaps = 10/898 (1%) Strand=Plus/Minus Query 77733 ATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTA 77792 |||||||| || ||||| | | || ||||||| || | ||||||||||| | Sbjct 3511487 ATCTCGGTGCAAAGATTTGAGCTTCGAATGGTGCCCAAGTTCTTCTGGTTGCTCTTCCTG 3511428 Query 77793 TTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATA 77852 ||||| | ||||| || || || | ||||| ||||| || |||| | || | ||| Sbjct 3511427 TTGCAGGCATCCTTGTAGAGCATGTAGGGAGTACCGGTCTCGGTCTGAGCCTCAAGAATC 3511368 Query 77853 GATTTCCAGACGACTCTAG-CTTTTATCATAGATTTGTATCGCCTCTCTCTTTCATATTG 77911 | | ||| | | ||| | | || | | | || | ||| |||||||| Sbjct 3511367 GCATACCACA-GCTTCTGGGCCTTGACGGTCTGACGGCCACGGCCCTCCTTTTCATATCT 3511309 Query 77912 AGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGG 77971 || ||| | ||| ||||| || | |||||| ||| ||| || ||||| || Sbjct 3511308 CTCGTAGAGCTCCTTAAACTCATCGCCGTAGACATCAGCCAGTCCTGGTGCTTCATGAGG 3511249 Query 77972 GCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCA 78031 ||| | | | ||| || | | || || || | ||| || | ||||| |||| Sbjct 3511248 GCAGAAAAGAGTCCATTCCTGGTTCTTCTCGACACGCTCCATGAACAAGTCAGGGGTCCA 3511189 Query 78032 TAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATC 78091 | |||| || || || |||| | |||||| || || |||||| | |||| Sbjct 3511188 CATAGCATAGAACAGGTCACGGGCACGGACTTCTTCCTTGCCGTGGTTCTTTCTTAGATT 3511129 Query 78092 GAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCG 78151 | || || | | ||||| |||||||| || || || || || | | | |||||||| Sbjct 3511128 CAAGAAGTCAAAGACATCAGCGTGCCATGGCTCCAGGTAGATGGCAAAAGCACCAGGTCG 3511069 Query 78152 TTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAAT 78211 || || || ||||| || | || | ||| || || || |||| | |||||| ||||| Sbjct 3511068 CTTGTTGCCGCCCTGGTCGACGTAGCGGGCCGTATTGTTGAAAACACGCAACATAGGAAT 3511009 Query 78212 AATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAAT--ATTA 78269 | || || ||||||||||| ||||| | ||| || ||| |||| || || | | Sbjct 3511008 GAGCCCATTTGATGTTCCATTAGTTCCTGCAATGTAGGAGCCAGTTGCACGGATGCAGTG 3510949 Query 78270 CTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTA 78329 || || | || || || || || |||| || || | || || || | ||| Sbjct 3510948 GGCATTGAGA--CCGATGCCACCAGCGGTCTTGGAGATCATGGCACAGGTCTTGAGTGTG 3510891 Query 78330 TCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGA 78389 || ||||| ||||| || || |||||| |||||| | | || ||| |||| || Sbjct 3510890 TCATAGATGCCCTCGATGCTATCATCCTTCATGTCGATCAAGAAGCAGGAGGACAGCTGG 3510831 Query 78390 TGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAA 78449 | || ||||| ||||| || | || || || ||||| ||||| || || | || Sbjct 3510830 GGCTGTGGTGTTCCGGCATTGAAGAGCGTGGGTGACGCATGAGTAAAGCACTTCTGGGAC 3510771 Query 78450 AGTAGATTGTATGTTTCAATAGCTGATTCTATGTC-CCATTGATGAATTCCTACCGCTAC 78508 | || |||||||| ||||| | || || || || | || || || || || || Sbjct 3510770 ATAAGGTTGTATGTCTCAATGGTCTTCTCAATATCGTCACCG-TGGATACCAACAGCCAC 3510712 Query 78509 ACGCATCAACATATGCTGAGGTCTTTCAACCGTCTT-ATTATTTATTTTCAACAAGTATG 78567 |||||| | ||| ||||| |||| ||| || ||| || ||||||| || ||||| Sbjct 3510711 ACGCATAATCATGTGCTGTGGTCGTTC-GGCGACTTGCTTGCCGATTTTCAGCAGGTATG 3510653 Query 78568 ATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625 | || ||||| || || |||||||| || | ||| ||||| || ||||| | ||| Sbjct 3510652 ACTTCTCCAACGTCTTGAAACCAAAGTATTGGTAGTTGAAGTCCCTGTCGTAGACAAT 3510595 >seq6 Length=3486194 Score = 102 bits (112), Expect = 1e-16 Identities = 215/320 (67%), Gaps = 3/320 (1%) Strand=Plus/Minus Query 48141 CATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGA 48200 ||||||||||| || | || ||||| | | || | ||| || ||||| |||||| Sbjct 2268700 CATGCAAAATCTGTGTGCATGCCCTCATCACGAGAGATGAGTTCATTTGAAAAGGTGAGA 2268641 Query 48201 CCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAAT 48260 || ||||| || || | |||||||| || || || || || |||||||||||||| Sbjct 2268640 CCAGGCATCAGGCCCTTGCTCTTGAGCCAGAAAATCGCAGCAAATGATCCAGAAAAGAAG 2268581 Query 48261 ATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGT---GT 48317 || || || ||||| || || || |||| | || || ||| || || | Sbjct 2268580 ATACCCTCGACGGCTGCGAAAGCAACCAGTCGTTGAGCGAAAGTGGACTCCTTATCAGAG 2268521 Query 48318 ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTA 48377 ||||| | | ||||| || |||||||| | ||||| || || || ||||||| Sbjct 2268520 ATCCATCTAAGAGCCCAGTCGGCCTTCTTGCGGATGCAAGGGATGGTGTCGATAGCATCG 2268461 Query 48378 AAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATT 48437 || || || | || || ||| ||| | ||||| || || || | || |||||| Sbjct 2268460 AACAGGTAGGTCTTCTCTTTGGGATCGCTCACGTATGTGTCGATGAGGAGTGAATACATC 2268401 Query 48438 TCGGAGTGAATATTTTCAAT 48457 |||||||| || || || || Sbjct 2268400 TCGGAGTGGATGTTCTCCAT 2268381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694668687116320