Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialophora_20americana_20[genbank_20GCA_5F000835435.1_202015-02-23] 13 sequences; 31,616,172 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq4 212 9e-50 seq6 116 5e-21 >seq4 Length=4310093 Score = 212 bits (234), Expect = 9e-50 Identities = 547/821 (67%), Gaps = 12/821 (1%) Strand=Plus/Minus Query 76598 ACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGT 76657 || || | ||| || | ||||| |||| | |||| || || || |||| | | Sbjct 3511217 ACACGCTCCATGAACAAGTCAGGGGTCCACATAGCATAGAACAGGTCACGGGCACGGACT 3511158 Query 76658 TCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGT 76717 ||||| || || |||||| | |||| | ||| || | | ||||| |||||||| Sbjct 3511157 TCTTCCTTGCCGTGGTTCTTTCTTAGATTCAAGAAGTCAAAGACATCAGCGTGCCATGGC 3511098 Query 76718 TCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCA 76777 || || || || || | | |||| ||||| || || || ||||| || | || | ||| Sbjct 3511097 TCCAGGTAGATGGCAAAAGCACCAGGTCGCTTGTTGCCGCCCTGGTCGACGTAGCGGGCC 3511038 Query 76778 GTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAA 76837 || || || |||| | |||||| ||||| | || || ||||| ||||| ||||| | | Sbjct 3511037 GTATTGTTGAAAACACGCAACATAGGAATGAGCCCATTTGATGTTCCATTAGTTCCTGCA 3510978 Query 76838 ATATAACTTCCACATGCACGAAT--ATTACTAATAGATAGGCCTATTCCTCCTGCCATTT 76895 || || ||| |||||| || | | || || | || || || || || | | Sbjct 3510977 ATGTAGGAGCCAGTTGCACGGATGCAGTGGGCATTGAGA--CCGATGCCACCAGCGGTCT 3510920 Query 76896 TAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCA 76955 | ||||| | |||||| || | |||||||||||||||||| || ||||||||| ||| Sbjct 3510919 TGGAGATCATGGCACAGGTCTTGAGTGTGTCATAGATGCCCTCGATGCTATCATCCTTCA 3510860 Query 76956 TGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAG 77015 ||| | | || ||| |||| || | || ||||| ||||| || | || | Sbjct 3510859 TGTCGATCAAGAAGCAGGAGGACAGCTGGGGCTGTGGTGTTCCGGCATTGAAGAGCGTGG 3510800 Query 77016 GAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAAT-AACTGCTTCT 77074 | || |||||||| || || || | || | || |||||||| ||||| || | || Sbjct 3510799 GTGACGCATGAGTAAAGCACTTCTGGGACATAAGGTTGTATGTCTCAATGGTCTTC-TCA 3510741 Query 77075 ATATC-CCATTGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTAC 77133 ||||| || | || || || ||||| |||||||| | ||| ||||| |||||||| | Sbjct 3510740 ATATCGTCACCG-TGGATACCAACAGCCACACGCATAATCATGTGCTGTGGTCGTTCGGC 3510682 Query 77134 AGTCTT-ATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGT 77192 | ||| || ||||||| || |||||| || ||||| || || |||||||| || | Sbjct 3510681 -GACTTGCTTGCCGATTTTCAGCAGGTATGACTTCTCCAACGTCTTGAAACCAAAGTATT 3510623 Query 77193 TGTATGAAAAGTCTCTTTCGTAAATAATAACCGAATTTAGTTTGTCCTTATATTTGGTAA 77252 ||| ||||| || ||||| | ||| |||| || | || ||| | | | | | Sbjct 3510622 GGTAGTTGAAGTCCCTGTCGTAGACAATGGCCGAGTTCAATTCGTCAGCGTGTCTCATGA 3510563 Query 77253 C-AATATCCATGACAGTGGTAGAAATAATTGGAGATCGTATTCCATTTTTAGGATTAACA 77311 | || | | | | | || || || || ||| | | || || ||||| | Sbjct 3510562 CGCATTCGTACGTCTCT-TTGGAGATCATGGGGGATAATTTGTTGTTCTTGGGATTGATG 3510504 Query 77312 TAGTTAAATAAGTCTTCCATTACGTCGCTAAATAGtttttttGTTTCCTTGTGTAGATTC 77371 |||| | | | |||| || ||| | ||| | || || |||| |||||| |||||| Sbjct 3510503 TAGTGATACAGGTCTGAAATAACGGCAGAAAACTGCTTCTTGGTTTGCTTGTGGAGATTC 3510444 Query 77372 GATACGGCTATTCTAGCAGCTAGAATTGCATAGTCAGGATG 77412 || || || || | || || || || |||||||| ||||| Sbjct 3510443 GAGACAGCAATACGTGCTGCAAGGATGGCATAGTCGGGATG 3510403 >seq6 Length=3486194 Score = 116 bits (128), Expect = 5e-21 Identities = 218/320 (68%), Gaps = 3/320 (1%) Strand=Plus/Minus Query 46630 CATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGC 46689 ||||||||||| || | ||| ||||| | | || | ||| || ||||| ||||| Sbjct 2268700 CATGCAAAATCTGTGTGCATGCCCTCATCACGAGAGATGAGTTCATTTGAAAAGGTGAGA 2268641 Query 46690 CCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAAT 46749 |||||||| || || | |||||||| || || || || || |||||||||||||| Sbjct 2268640 CCAGGCATCAGGCCCTTGCTCTTGAGCCAGAAAATCGCAGCAAATGATCCAGAAAAGAAG 2268581 Query 46750 ATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATGA--- 46806 || || || || || ||||| || || |||| | || || ||| || |||| | Sbjct 2268580 ATACCCTCGACGGCTGCGAAAGCAACCAGTCGTTGAGCGAAAGTGGACTCCTTATCAGAG 2268521 Query 46807 ATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTA 46866 ||||| || ||||||| || ||||| || | ||||| || || || ||||||| Sbjct 2268520 ATCCATCTAAGAGCCCAGTCGGCCTTCTTGCGGATGCAAGGGATGGTGTCGATAGCATCG 2268461 Query 46867 AAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATT 46926 || || || | || || | ||| | || ||||| || || | || |||||| Sbjct 2268460 AACAGGTAGGTCTTCTCTTTGGGATCGCTCACGTATGTGTCGATGAGGAGTGAATACATC 2268401 Query 46927 TCTGAATGAATGTTTTCAAT 46946 || || || ||||| || || Sbjct 2268400 TCGGAGTGGATGTTCTCCAT 2268381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712934284148160