Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phialophora_20americana_20[genbank_20GCA_5F000835435.1_202015-02-23]
13 sequences; 31,616,172 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq5 147 5e-30
seq1 138 3e-27
>seq5
Length=3889323
Score = 147 bits (162), Expect = 5e-30
Identities = 159/208 (76%), Gaps = 7/208 (3%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA---AGCTCA 177980
|| || ||||| || || ||||| || || || |||||||| ||||| || |||
Sbjct 1366123 CAGATCTTCGTCAAGACCCTCACCGGCAAGACAATCACCCTTGAGGTTGAGTCGAGC--- 1366179
Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040
||||||||||| || ||||| ||||| |||||||| ||||| || ||||| || |||
Sbjct 1366180 GACACCATCGACAATGTCAAGAGCAAGATCCAGGACAAGGAAGGCATTCCTCCTGATCAG 1366239
Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100
|| || || |||||||| || ||||||||||| ||||| | || || |||||| |||
Sbjct 1366240 CAGCGCCTCATCTTCGCTGGTAAACAGCTCGAGGATGGCCGCACCCTGAGCGATTACAAC 1366299
Query 178101 GTCCAAAAAGAATCAACACTGCATCTTG 178128
|||| ||||| || |||||||| ||||
Sbjct 1366300 ATCCAGAAAGAGTCGACACTGCA-CTTG 1366326
Score = 145 bits (160), Expect = 2e-29
Identities = 161/215 (75%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| |||||||| || ||||| || || || ||||| || ||||| ||| ||| ||
Sbjct 1366579 CAAATCTTCGTGAAGACCCTCACGGGCAAGACTATCACGCTAGAGGTCGAATCCTCGGAT 1366638
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || |||||||| || ||||| ||||| || || ||||| || ||||||||
Sbjct 1366639 ACAATTGACAACGTCAAGTCGAAAATTCAAGACAAGGAGGGTATCCCACCCGACCAGCAG 1366698
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
||| | ||||||||||| || ||||| || || || | || || | || || ||| ||
Sbjct 1366699 CGATTGATCTTCGCCGGCAAGCAGCTTGAGGACGGCCGAACGCTCTCAGACTACAACATC 1366758
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138
|| || ||||| || || ||||| ||| | |||||
Sbjct 1366759 CAGAAGGAATCCACCCTCCATCTCGTTCTCAGACT 1366793
Score = 113 bits (124), Expect = 1e-19
Identities = 154/215 (72%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || || | || || || || || || | || || || |||||||||
Sbjct 1366807 CAGATCTTCGTCAAGACCTTGACCGGCAAGACCATTACATTGGAAGTTGAGAGCTCAGAC 1366866
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| || || ||||| ||||| |||||||| || || ||||| || ||||||||
Sbjct 1366867 ACCATTGACAATGTCAAGTCGAAGATCCAGGACAAGGAGGGCATCCCACCCGACCAGCAG 1366926
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | ||||||||||| || ||||| ||||| || | || || |||| || ||| |
Sbjct 1366927 AGATTGATCTTCGCCGGCAAGCAGCTTGAAGACGGCCGAACGCTGTCCGACTACAACATT 1366986
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138
|| || || || |||| || || |||||||
Sbjct 1366987 CAGAAGGAGAGCACTTTGCACCTGGTGCTGAGACT 1367021
>seq1
Length=6061779
Score = 138 bits (152), Expect = 3e-27
Identities = 120/149 (81%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 177930 TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATC 177989
||||| || || ||||| || || || |||||||||||||| ||| ||||||||| |||
Sbjct 4126399 TTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAATCCTCAGACACAATC 4126340
Query 177990 GAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTT 178049
|| || |||||| ||||| || ||||| || || ||||| || |||||||| |||||
Sbjct 4126339 GACAATGTCAAATCCAAGATCCAAGACAAGGAGGGCATCCCACCCGACCAGCAGCGACTG 4126280
Query 178050 ATCTTCGCCGGAAAACAGCTCGAAGATGG 178078
||||||||||| || || |||||||| ||
Sbjct 4126279 ATCTTCGCCGGCAAGCAACTCGAAGACGG 4126251
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203730999503522
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |