Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialophora_20americana_20[genbank_20GCA_5F000835435.1_202015-02-23] 13 sequences; 31,616,172 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq5 147 5e-30 seq1 138 3e-27 >seq5 Length=3889323 Score = 147 bits (162), Expect = 5e-30 Identities = 159/208 (76%), Gaps = 7/208 (3%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA---AGCTCA 177980 || || ||||| || || ||||| || || || |||||||| ||||| || ||| Sbjct 1366123 CAGATCTTCGTCAAGACCCTCACCGGCAAGACAATCACCCTTGAGGTTGAGTCGAGC--- 1366179 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 ||||||||||| || ||||| ||||| |||||||| ||||| || ||||| || ||| Sbjct 1366180 GACACCATCGACAATGTCAAGAGCAAGATCCAGGACAAGGAAGGCATTCCTCCTGATCAG 1366239 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || || || |||||||| || ||||||||||| ||||| | || || |||||| ||| Sbjct 1366240 CAGCGCCTCATCTTCGCTGGTAAACAGCTCGAGGATGGCCGCACCCTGAGCGATTACAAC 1366299 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTG 178128 |||| ||||| || |||||||| |||| Sbjct 1366300 ATCCAGAAAGAGTCGACACTGCA-CTTG 1366326 Score = 145 bits (160), Expect = 2e-29 Identities = 161/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| |||||||| || ||||| || || || ||||| || ||||| ||| ||| || Sbjct 1366579 CAAATCTTCGTGAAGACCCTCACGGGCAAGACTATCACGCTAGAGGTCGAATCCTCGGAT 1366638 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || |||||||| || ||||| ||||| || || ||||| || |||||||| Sbjct 1366639 ACAATTGACAACGTCAAGTCGAAAATTCAAGACAAGGAGGGTATCCCACCCGACCAGCAG 1366698 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | ||||||||||| || ||||| || || || | || || | || || ||| || Sbjct 1366699 CGATTGATCTTCGCCGGCAAGCAGCTTGAGGACGGCCGAACGCTCTCAGACTACAACATC 1366758 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 || || ||||| || || ||||| ||| | ||||| Sbjct 1366759 CAGAAGGAATCCACCCTCCATCTCGTTCTCAGACT 1366793 Score = 113 bits (124), Expect = 1e-19 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || | || || || || || || | || || || ||||||||| Sbjct 1366807 CAGATCTTCGTCAAGACCTTGACCGGCAAGACCATTACATTGGAAGTTGAGAGCTCAGAC 1366866 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || ||||| ||||| |||||||| || || ||||| || |||||||| Sbjct 1366867 ACCATTGACAATGTCAAGTCGAAGATCCAGGACAAGGAGGGCATCCCACCCGACCAGCAG 1366926 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||||||||| || ||||| ||||| || | || || |||| || ||| | Sbjct 1366927 AGATTGATCTTCGCCGGCAAGCAGCTTGAAGACGGCCGAACGCTGTCCGACTACAACATT 1366986 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 || || || || |||| || || ||||||| Sbjct 1366987 CAGAAGGAGAGCACTTTGCACCTGGTGCTGAGACT 1367021 >seq1 Length=6061779 Score = 138 bits (152), Expect = 3e-27 Identities = 120/149 (81%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 177930 TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATC 177989 ||||| || || ||||| || || || |||||||||||||| ||| ||||||||| ||| Sbjct 4126399 TTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAATCCTCAGACACAATC 4126340 Query 177990 GAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTT 178049 || || |||||| ||||| || ||||| || || ||||| || |||||||| ||||| Sbjct 4126339 GACAATGTCAAATCCAAGATCCAAGACAAGGAGGGCATCCCACCCGACCAGCAGCGACTG 4126280 Query 178050 ATCTTCGCCGGAAAACAGCTCGAAGATGG 178078 ||||||||||| || || |||||||| || Sbjct 4126279 ATCTTCGCCGGCAAGCAACTCGAAGACGG 4126251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203730999503522