Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialophora_20americana_20[genbank_20GCA_5F000835435.1_202015-02-23] 13 sequences; 31,616,172 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq5 127 2e-24 seq3 98.7 9e-16 >seq5 Length=3889323 Score = 127 bits (140), Expect = 2e-24 Identities = 169/231 (73%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || || | | |||||| |||| |||||||||||||||||||| |||||||| Sbjct 1367030 CCGCCACGCAGTCTCAGCACCAGGTGCAAAGTGCTCTCCTTCTGAATGTTGTAGTCGGAC 1366971 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || |||| || ||||||||||||||||| |||| | ||| ||||| | || Sbjct 1366970 AGCGTTCGGCCGTCTTCAAGCTGCTTGCCGGCGAAGATCAATCTCTGCTGGTCGGGTGGG 1366911 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTC 41811 | || |||||||||| ||| || ||| || | | | ||||| ||| ||| Sbjct 1366910 ATGCCCTCCTTGTCCTGGATCTTCGACTT-GACATTGTCAATGGTGTCTGAGCT---CTC 1366855 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || |||| || || || || || |||| ||||| ||||| |||||||| Sbjct 1366854 AACTTCCAATGTAATGGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 1366804 Score = 123 bits (136), Expect = 2e-23 Identities = 167/231 (72%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | |||| ||||| || ||| ||||| ||||| || ||| Sbjct 1366347 GCCACCACGGAGACGGAGGACCAAGTGCAGTGTCGACTCTTTCTGGATGTTGTAATCGCT 1366288 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 |||||||| | || |||||||| || || ||||| || |||||||| || || | || Sbjct 1366287 CAGGGTGCGGCCATCCTCGAGCTGTTTACCAGCGAAGATGAGGCGCTGCTGATCAGGAGG 1366228 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCC 41812 || || ||||||||| ||| || ||| || | ||| |||||||||||||| Sbjct 1366227 AATGCCTTCCTTGTCCTGGATCTTGCTCTTGACATTGTCGATG--GTGTCGCTCGACTCA 1366170 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||||| | || || || || || || || ||||| ||||| ||||||||| Sbjct 1366169 ACCTCAAGGGTGATTGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATG 1366119 Score = 113 bits (124), Expect = 4e-20 Identities = 153/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 || ||||| || ||| |||||||| ||||| ||||| ||||| || || |||| || Sbjct 1366784 ACGAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCTGAGAGCGTTCGGCCGTCCTCA 1366725 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||||||||||||||| |||| ||||| ||||| | || | | |||||||| | || Sbjct 1366724 AGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCGGGTGGGATACCCTCCTTGT-CTTG 1366666 Query 41774 ATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832 | |||| | | ||| | | | || || || || ||||| | ||| || || || Sbjct 1366665 AATTTTCGACTTGACGTTGTCAATTGTATCCGAGGATTCGACCTCTAGCGTGATAGTCTT 1366606 Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||||| || ||||| ||||| || |||||| Sbjct 1366605 GCCCGTGAGGGTCTTCACGAAGATTTGCATG 1366575 Score = 105 bits (116), Expect = 6e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | || ||||| || || ||| || || || || |||||||| Sbjct 1366575 GCCACCACGGAGACGGAGGACGAGATGGAGAGTCGACTCTTTTTGGATATTGTAGTCGGA 1366516 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 |||||||| |||| || || ||||| || || || || || || || || || | || Sbjct 1366515 AAGGGTGCGGCCGTCTTCAAGTTGCTTTCCAGCAAAGATGAGACGTTGCTGATCGGGAGG 1366456 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 || || ||||||||| ||| || ||| | || | | | || ||||||||||| | Sbjct 1366455 AATGCCCTCCTTGTCTTGGATCTTGCTCTTGA-CGTTGTCGATGGTATCGCTCGACTCGA 1366397 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| | || || || || || || || ||||| ||||| || |||||| Sbjct 1366396 CCTCAAGGGTGATGGTCTTGCCGGTGAGAGTCTTGACGAAGATTTGCATG 1366347 >seq3 Length=4945454 Score = 98.7 bits (108), Expect = 9e-16 Identities = 101/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || |||| | ||||| || | || ||||||||| ||| | ||||| || Sbjct 2827484 CCGCCCCGGAGACTGAGGACCAGGTGAATGGTCGACTCCTTCTGGATGCTGTAGTCCGAA 2827543 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| |||| |||| |||||||||||||| |||||||| || ||||| || ||| Sbjct 2827544 AGGGTGCGTCCGTCTGCGAGTTGCTTGCCGGCGAAGATCAGGCGTTGCTGGTCGGCAGGA 2827603 Query 41756 ACGCTCTCCTTG 41767 | || |||||| Sbjct 2827604 ATTCTTTCCTTG 2827615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462303924875600