Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialophora_20attae_20[genbank_20GCA_5F001299255.1_202015-09-25] 131 sequences; 30,363,635 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq73 114 3e-20 seq38 89.7 1e-12 >seq73 Length=165115 Score = 114 bits (126), Expect = 3e-20 Identities = 162/225 (72%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 230414 AGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGG-CATGAACGCTGAACTTATG 230472 |||||||| | ||||| | || || |||| | |||| ||||||||| | || ||| Sbjct 158336 AGGAGTTCCTCACAGACGCCCTCCCCTG-CGCCCTCTTGGGCATGAACGCCAACCTGATG 158394 Query 230473 GGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTG 230532 ||||||||||| ||||| ||||| ||| | | || || | || || || Sbjct 158395 AAGCAGTACATCGAGTTCGTCGCCGATCGCCTGCTCGTCGCTATGGGCAACCCCAAGTAC 158454 Query 230533 TACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAAC 230592 | ||| ||| |||||||||||| || |||||| ||| || || || ||||| ||| Sbjct 158455 TTCAAGTCTCAGAACCCCTTTGACTTCATGGAGAACATCTCTCTCGCTGGCAAGACAAAC 158514 Query 230593 TTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATG 230637 |||||||| ||||||||| ||||||| |||| | | ||||| ||| Sbjct 158515 TTCTTCGAGAAGCGTGTCGGTGACTACCAGAAGGCAGGTGTCATG 158559 >seq38 Length=837193 Score = 89.7 bits (98), Expect = 1e-12 Identities = 183/268 (68%), Gaps = 7/268 (3%) Strand=Plus/Minus Query 319402 TTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAATGG 319461 || ||||| |||| || || || | || |||| || || || ||||||| ||| Sbjct 762175 TTGACGAAGTCGGCGAGGTTGCCGGTATAGGTCTTGAGTTTC---TTTTGTTCGTAGTGG 762119 Query 319462 ATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCACGAA 319521 || || ||||| || ||||||||||| ||||||||||| || || || | | | | Sbjct 762118 ATGATGTTTGTGCAGACGGCGTCGAGGAAGCCGGAGTCGTGGGAGACGATGAGGGAGGTG 762059 Query 319522 ACGTCCTTAAGGTTGATCAGGTA-TTCAATC-AACCACCTCACGTTAGACACAGAAAGAT 319579 | || | || || | ||||| ||| || | ||| | ||||| | || |||| Sbjct 762058 ATTTCGCTGTGGGTGTTGAGGTAGTTC--TCGAGCCATTTGACGTTGGCGACGTCGAGAT 762001 Query 319580 GGTTGGTCGGCTCGTCAAGAAGCAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAGAG 319639 | || || |||||||| || || | | | ||| || |||||| || || || |||| Sbjct 762000 GATTAGTTGGCTCGTCGAGCAGGAAGACGTCGGCGCGCATGAGCATGGCGCGGGCGAGAG 761941 Query 319640 CGAGTTTCATTTTCCACCCTCCGGAAAG 319667 |||| ||||| ||||| || ||||| || Sbjct 761940 CGAGCTTCATCTTCCAGCCACCGGATAG 761913 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057822224508530