Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialophora_20attae_20[genbank_20GCA_5F001299255.1_202015-09-25] 131 sequences; 30,363,635 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq73 389 4e-103 seq46 131 2e-25 seq57 111 2e-19 seq48 111 2e-19 >seq73 Length=165115 Score = 389 bits (430), Expect = 4e-103 Identities = 610/863 (71%), Gaps = 15/863 (2%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 ||||| |||| | || |||||| ||| ||||| | |||||| | | |||| || Sbjct 157639 GAGCCATTGCTTCAGGAAAACCCCAACCGCTTCGTCCTCTTCCCCCTCAAGTACCATGAG 157698 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| || || || || |||||||||| || || || ||||| Sbjct 157699 ATCTGGCAAATGTACAAGAAAGCAGAAGCTAGCTTCTGGACCGCAGAAGAAGTCGACCTC 157758 Query 116696 TCCAAGGA-CACGAGCGACTGGGAGC---GCTTGAACGACAACGAGCGCCATTTCATCAA 116751 ||| | || | | | ||||| | | || | |||||| ||||||| | ||||| Sbjct 157759 TCCCAAGATCTACAAC-ACTGGCACCACCGCCTCAACGACGACGAGCGGTACTTCATTTC 157817 Query 116752 GCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG 116811 |||||||| ||||| |||||||| ||||||||||||||||||||| || ||||||| Sbjct 157818 ACACGTGCTCGCCTTCTTCGCCGCGTCCGACGGCATCGTCAACGAGAACCTCCTCGAGCG 157877 Query 116812 TTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871 ||| | ||||| ||||| |||| ||||| |||||||||||||| |||||| || Sbjct 157878 CTTCTCCGGCGAGGTCCAGGTCCCCGAAGCGCGTTGCTTCTACGGCTTCCAGATCATGAT 157937 Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGA 116931 ||| ||| | ||||| |||||||| ||| ||||||||||||||| | || | | Sbjct 157938 GGAAAACATCCACTCCGAAATGTACTCGCTGCTCATCGACACGTACATCAGCGACCCCAA 157997 Query 116932 GGAGAAGCTC-CGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCG 116990 | | | | || | | || |||||||||| || || || || || ||||||||| Sbjct 157998 GCA-ACGATCACACCTCTTCGACGCCATCGACACCATCCCCTGTATCCGCAAGAAGGCCG 158056 Query 116991 AGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCT 117050 | ||||| || || |||||| ||| || | | |||||| ||||||| || || | Sbjct 158057 ACTGGGCACTCCGTTGGATCTCCGACAAGCAATCGACCTTCGCGCAGCGCCTCGTCGCAT 158116 Query 117051 TCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGA 117110 |||| || ||||| ||| ||||||| || ||| ||||| |||| || |||||||||| Sbjct 158117 TCGCCGCAGTCGAAGGCATCTTCTTCTCCGGCTCCTTCGCGTCCATCTTCTGGCTCAAGA 158176 Query 117111 AACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTC 117170 ||||||| || ||||||||||| || ||| |||||||||||||||| | |||||||| Sbjct 158177 AACGCGGTCTGATGCCCGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGCA 158236 Query 117171 TGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGAC---CGAGCGCGG 117227 |||| |||||| ||||| | ||| || || | ||| || | | | | | Sbjct 158237 TGCACACCGACTTCGCCTGCCTACTGCTCTCCCACCTCAAGCACCGCCCCTCAAAAGAAG 158296 Query 117228 CGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAG 117287 | | || || ||| || ||| || ||||||||||||||| |||||||| || | Sbjct 158297 C---CATCCAGGCCATCATCGTCGAGGCCGTCGCCATCGAGCAGGAGTTCCTCACAGACG 158353 Query 117288 CGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACATCGAGTTC 117346 | || || |||| | || || | | || || | |||| ||| |||||||||||| Sbjct 158354 CCCT-CCCCTGCGCCCTCTTGGGCATGAACGCCAACCTGATGAAGCAGTACATCGAGTTC 158412 Query 117347 GTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCG 117406 |||||||| | ||||| ||| ||| | | ||||| ||| ||| | | ||||| Sbjct 158413 GTCGCCGATCGCCTGCTCGTCGCTATGGGCAACCCCAAGTACTTCAAGTCTCAGAACCCC 158472 Query 117407 CTGGACTTTATGAACCTCATCTC 117429 | ||||| ||| | |||||| Sbjct 158473 TTTGACTTCATGGAGAACATCTC 158495 >seq46 Length=1539107 Score = 131 bits (144), Expect = 2e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || ||||| ||||| |||||||| |||| ||||| | | Sbjct 988998 ATGCAAATCTTCGTCAAGACTCTCACTGGCAAGACCATCACTCTCGAGGTCGAGTCATCT 988939 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | ||||| || |||| ||||| ||||||||||| | |||||| Sbjct 988938 GACACCATCGACAATGTCAAGAGTAAGATTCAGGACAAGGAGGGCATCCCACCCGACCAG 988879 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| || |||| ||| ||||| ||||| || || | || || || ||||||||| Sbjct 988878 CAACGCCTGATCTTCGCCGGCAAGCAGCTTGAGGATGGTCGTACTCTGTCTGACTACAAC 988819 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||| ||| | || || || | ||| |||| Sbjct 988818 ATCCAGAAAGAGTCTACTCTACACTTGGTGCTGCG 988784 Score = 122 bits (134), Expect = 9e-23 Identities = 140/186 (75%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGA 40772 || ||||| ||||||||| | || ||||| || | |||| | | | |||| ||||| Sbjct 989202 ACCGGCAAGACCATCACCCTTGAGGTCGAGTCCTCGGACACCATTGACAACG-TCAAGAG 989144 Query 40773 AAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAA 40832 || |||| ||||| || ||||| || | ||||||||||| ||||||| || ||||| Sbjct 989143 CAAGATTCAGGACAAGGAAGGCATTCCTCCTGACCAGCAACGTCTCATCTTTGCTGGCAA 989084 Query 40833 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 ||||| || || | |||||| | | ||||||||||||||||||||| |||| || || Sbjct 989083 GCAGCTCGAAGATGGTCGCACCTTGAGCGACTACAACATCCAGAAGGAATCCACCCTTCA 989024 Query 40893 TCTAGT 40898 || || Sbjct 989023 CCTTGT 989018 >seq57 Length=1510414 Score = 111 bits (122), Expect = 2e-19 Identities = 109/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 40780 CTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTG 40839 || ||||| ||||||||||| | |||||||| || ||||||| ||| ||||| ||||| Sbjct 1446628 CTAGACAAGGAGGGCATCCCACCCGACCAGCAGCGTCTCATCTTCGCCGGCAAGCAGCTC 1446687 Query 40840 GACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 || |||| ||||||||| |||||| ||||||||||||||| | || || || | || Sbjct 1446688 GAAGACGGTCGCACCCTCTCCGACTATAACATCCAGAAGGAGTCGACTCTTCACTTGGTC 1446747 Query 40900 TTGCGCTTGAGGGGCGGCGGC 40920 | || || | ||||| ||| Sbjct 1446748 CTTCGTCTGCGTGGCGGTGGC 1446768 >seq48 Length=500340 Score = 111 bits (122), Expect = 2e-19 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 40689 AATGCAAATA--TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 ||||| || | ||||| || || ||||||||||| ||||||||| |||| || || | Sbjct 102462 AATGCGAACAGCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTGGAGTCT 102403 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | | | ||||| || || | ||||| || |||||||| | ||| Sbjct 102402 TCAGACACCATTGACAATGTCAAGAGCAAGATCCAAGACAAGGAAGGCATCCCACCTGAC 102343 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 |||||||| || |||| ||| ||||| || ||||| || | ||||| || ||||| Sbjct 102342 CAGCAACGCCTGATCTTCGCCGGCAAGCAACTGGAAGATGGCCGCACTCTATCAGACTAT 102283 Query 40867 AACATCCAGAAGG 40879 ||||||||||||| Sbjct 102282 AACATCCAGAAGG 102270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515218356328560