Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialophora_20attae_20[genbank_20GCA_5F001299255.1_202015-09-25] 131 sequences; 30,363,635 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq46 140 2e-28 seq57 89.7 3e-13 >seq46 Length=1539107 Score = 140 bits (154), Expect = 2e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| || || | |||||||| ||||| |||| |||||||| ||||||||||| ||| Sbjct 988772 CCGCCACGAAGACGCAGCACCAAGTGTAGAGTAGACTCTTTCTGGATGTTGTAGTCAGAC 988831 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || || | ||||||||| ||||| || || || ||||||||| || Sbjct 988832 AGAGTACGACCATCCTCAAGCTGCTTGCCGGCGAAGATCAGGCGTTGCTGGTCGGGTGGG 988891 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | || | | || | || | || ||||| Sbjct 988892 ATGCCCTCCTTGTCCTGAATCTTACTCTTGACATTGTCGATGGTGTCAGATGACTCGACC 988951 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| ||||| |||||||| || || ||||| ||||| Sbjct 988952 TCGAGAGTGATGGTCTTGCCAGTGAGAGTCTTGACGAAGATTTGCAT 988998 Score = 134 bits (148), Expect = 9e-27 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | ||||||| ||| | ||| || || ||||| |||||||| || || Sbjct 988544 CCACCACGCAGGCGGAGCACCAAGTGCAGAGTGCTCTCCTTCTGAATGTTGTAATCTGAG 988603 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| || |||| ||||| |||||||| ||||| || | ||||| ||||| || Sbjct 988604 AGCGTTCGTCCGTCTTCCAATTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCAGGTGGG 988663 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| ||||| ||| | || | | || | || | |||||| || Sbjct 988664 ATACCCTCCTTGTCCTGGATCTTGCTCTTCACATTGTCGATGGTGTCTGACGATTCCACT 988723 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||| |||||||| |||||||| || || ||||||||||| Sbjct 988724 TCCAACGTGATAGTTTTGCCTGTGAGAGTCTTGACGAAGATCTGCAT 988770 >seq57 Length=1510414 Score = 89.7 bits (98), Expect = 3e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| ||||| | || |||| ||| | ||| || ||||| ||||| |||||||| Sbjct 1446764 CCGCCACGCAGACGAAGGACCAAGTGAAGAGTCGACTCCTTCTGGATGTTATAGTCGGAG 1446705 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || |||| || | ||||||||| ||||| ||||| |||||||||||| || Sbjct 1446704 AGGGTGCGACCGTCTTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCGGGTGGG 1446645 Query 34283 ACGCTCTCCTTGTC 34296 | || ||||||||| Sbjct 1446644 ATGCCCTCCTTGTC 1446631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323071484195360