Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialophora_20attae_20[genbank_20GCA_5F001299255.1_202015-09-25] 131 sequences; 30,363,635 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq46 113 4e-20 seq73 93.3 4e-14 seq57 84.2 2e-11 >seq46 Length=1539107 Score = 113 bits (124), Expect = 4e-20 Identities = 149/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| || | ||| | || | ||||| || || || || || ||||| || |||||| Sbjct 989000 CCGCCACGGAGACGGAGGACAAGGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGCTC 989059 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||||||||||| || |||||| |||| ||||||||||| || ||||| Sbjct 989060 AAGGTGCGACCATCTTCGAGCTGCTTGCCAGCAAAGATGAGACGTTGCTGGTCAGGAGGA 989119 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGT-TTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 |||||||| ||||| ||| | || | || | | || | ||||| | || ||| || Sbjct 989120 ATGCCTTCCTTGTC-CTGAATCTTGCTCTTGACGTTGTCAATGGTGTCCGAGGACTCGAC 989178 Query 139717 CTCAACGGTCACCGTCTTGCCGGT 139740 ||||| ||| | ||||||||||| Sbjct 989179 CTCAAGGGTGATGGTCTTGCCGGT 989202 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| || | ||||| || ||||| | ||||||||||| || ||||| || || | Sbjct 988772 CCGCCACGAAGACGCAGCACCAAGTGTAGAGTAGACTCTTTCTGGATGTTGTAGTCAGAC 988831 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | || || ||||| || || || ||||||| |||||||| ||||| || Sbjct 988832 AGAGTACGACCATCCTCAAGCTGCTTGCCGGCGAAGATCAGGCGTTGCTGGTCGGGTGGG 988891 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGT-TTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||| || ||||| ||| | || | || | | || | ||||| | | ||| || Sbjct 988892 ATGCCCTCCTTGTC-CTGAATCTTACTCTTGACATTGTCGATGGTGTCAGATGACTCGAC 988950 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||| | || | |||||||| || | || || ||||| ||||||||| Sbjct 988951 CTCGAGAGTGATGGTCTTGCCAGTGAGAGTCTTGACGAAGATTTGCATA 988999 >seq73 Length=165115 Score = 93.3 bits (102), Expect = 4e-14 Identities = 330/511 (65%), Gaps = 5/511 (1%) Strand=Plus/Plus Query 52552 CCGTGTGTGCGCAAAAAGGATGATTGGGCATTGAAATGGATCGAAAACGACAAAGCCACT 52611 || ||| | ||||| |||| || |||||| | |||||| || | || | || Sbjct 158035 CCCTGTATCCGCAAGAAGGCCGACTGGGCACTCCGTTGGATCTCCGACAAGCAATCGACC 158094 Query 52612 TTTGCCGAACGTCTGGTCGCGTTTGCTATAGTGGAAGGTGTGtttttttCGGGTAGTTTT 52671 || || | || || ||||| || || ||| ||||| | || || || || || Sbjct 158095 TTCGCGCAGCGCCTCGTCGCATTCGCCGCAGTCGAAGGCATCTTCTTCTCCGGCTCCTTC 158154 Query 52672 GCGGCAATATTTTACATCAA-AACCTTGGGCATAATGCCCGGCCTCACGTTTAGCAACGA 52730 ||| | || || | |||| || | || | | |||||||||||||| || |||||| Sbjct 158155 GCGTCCATCTTCTGGCTCAAGAAACGCGGTC-TGATGCCCGGCCTCACCTTCTCCAACGA 158213 Query 52731 GTTGATATCGCGCGACGAAGGAATGCACACAGATTTTGCGTGTTTGTATTATAATACGCG 52790 | | || || |||||||| || |||||||| || || || || | | | | | | Sbjct 158214 GCTCATCTCCCGCGACGAGGGCATGCACACCGACTTCGCCTGCCT--ACTGCTCTCC-CA 158270 Query 52791 CGTTAAAGAAAAATTGTCATATGAAAAAATTCTAGACATGTTTAAAGAGGCCGTCGACAT 52850 | | || | ||| | ||| || | | ||| | |||||||||| ||| Sbjct 158271 CCTCAAGCACCGCCCCTCAAAAGAAGCCATCCAGGCCATCATCGTCGAGGCCGTCGCCAT 158330 Query 52851 TGAAAAAGAGTTTTTTACGGACGCTTTACCCGTATCATTGTTGGGCATGAACGCGACCAT 52910 || | ||||| | || ||||| | ||| | | |||||||||||||| | | | Sbjct 158331 CGAGCAGGAGTTCCTCACAGACGCCCTCCCCTGCGCCCTCTTGGGCATGAACGCCAACCT 158390 Query 52911 GATGTGCGAGTACATCGAGTTTGTTGCGGACAGACTGTTGATGCAGCTCGGTCAGCCGAA 52970 |||| ||||||||||||| || || || | ||| | | | || | || || Sbjct 158391 GATGAAGCAGTACATCGAGTTCGTCGCCGATCGCCTGCTCGTCGCTATGGGCAACCCCAA 158450 Query 52971 ATACTATAATGCGCGTAACCCCTTTTCGTTTATGAACAACATATCGCTCGAGGGCAAAAC 53030 |||| || | | ||||||||| || ||| | ||||| || |||| ||||| || Sbjct 158451 GTACTTCAAGTCTCAGAACCCCTTTGACTTCATGGAGAACATCTCTCTCGCTGGCAAGAC 158510 Query 53031 AAACTTTTTCGAGAGACGTGTGGGCGAGTAC 53061 |||||| ||||||| ||||| || || ||| Sbjct 158511 AAACTTCTTCGAGAAGCGTGTCGGTGACTAC 158541 >seq57 Length=1510414 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| || | ||| | || ||||||| || ||||| || || |||||||| ||| Sbjct 1446764 CCGCCACGCAGACGAAGGACCAAGTGAAGAGTCGACTCCTTCTGGATGTTATAGTCGGAG 1446705 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| |||||||||||| || || || |||| ||||| ||||| ||||| || Sbjct 1446704 AGGGTGCGACCGTCTTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCGGGTGGG 1446645 Query 139658 ATGCCTTCTTTGTC 139671 ||||| || ||||| Sbjct 1446644 ATGCCCTCCTTGTC 1446631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496063187695200