Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialophora_20attae_20[genbank_20GCA_5F001299255.1_202015-09-25] 131 sequences; 30,363,635 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq73 122 8e-23 seq46 104 2e-17 seq57 98.7 9e-16 >seq73 Length=165115 Score = 122 bits (134), Expect = 8e-23 Identities = 335/503 (67%), Gaps = 9/503 (2%) Strand=Plus/Plus Query 46096 CGCAAGAAAACCGACTGGGCGATGAAGTGGATCAACAGCA-GCACCGCGACTTTCGCCGA 46154 |||||||| |||||||||| | |||||| | || ||| |||| ||||| | Sbjct 158044 CGCAAGAAGGCCGACTGGGCACTCCGTTGGATCTCCGACAAGCAAT-CGACCTTCGCGCA 158102 Query 46155 GCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTTTTGCCGCCAT 46214 ||| | || || || || || || ||| |||| || || ||| || || |||| Sbjct 158103 GCGCCTCGTCGCATTCGCCGCAGTCGAAGGCATCTTCTTCTCCGGCTCCTTCGCGTCCAT 158162 Query 46215 CTTTTACATCAA-AACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAACGAGCTGATAT 46273 ||| | |||| || | || | | ||||||||||| || || ||||||||| || | Sbjct 158163 CTTCTGGCTCAAGAAACGCGGTC-TGATGCCCGGCCTCACCTTCTCCAACGAGCTCATCT 158221 Query 46274 CGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCT-CTACTATAACACTCGCGTGCAC 46332 | |||||||||||| |||| || ||||| || || || || || | ||| | | |||| Sbjct 158222 CCCGCGACGAGGGCATGCACACCGACTTCGCCTGCCTACTGCTCTCCCAC-CTCAAGCAC 158280 Query 46333 GACAAGCTTGCGCCCGACACCGTGCTGAGCATGTTCAAGGAGGCGGTGGCCATTGAGAAG 46392 | || | || || | | | ||| || ||||| || ||||| ||| || Sbjct 158281 CGCCC-CT--CAAAAGAAGCCATCCAGGCCATCATCGTCGAGGCCGTCGCCATCGAGCAG 158337 Query 46393 GAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAACGCACAGTCAATGTGC 46452 ||||| | || | ||| || ||| ||||| ||||||||||||| | ||| Sbjct 158338 GAGTTCCTCACAGACGCCCTCCCCTGCGCCCTCTTGGGCATGAACGCCAACCTGATGAAG 158397 Query 46453 GACTACATCGAGTTTGTAGCGGACCGACTGCTCGTGCAGCTTCACCAGCCGAAGCATTTT 46512 | ||||||||||| || || || || |||||||| | | | || ||| | || Sbjct 158398 CAGTACATCGAGTTCGTCGCCGATCGCCTGCTCGTCGCTATGGGCAACCCCAAGTACTTC 158457 Query 46513 CACGCGCGCAATCCATTTGAGTTTATGAACAACATCTCCCTGGAGGGCAAAACTAATTTT 46572 | | | || || ||||| || ||| | |||||||| || | ||||| || || || Sbjct 158458 AAGTCTCAGAACCCCTTTGACTTCATGGAGAACATCTCTCTCGCTGGCAAGACAAACTTC 158517 Query 46573 TTCGAAAAGCGCGTCGGCGAGTA 46595 ||||| ||||| ||||| || || Sbjct 158518 TTCGAGAAGCGTGTCGGTGACTA 158540 >seq46 Length=1539107 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | ||||||||| || |||| || ||||| || || |||||||| || | Sbjct 988772 CCGCCACGAAGACGCAGCACCAAGTGTAGAGTAGACTCTTTCTGGATGTTGTAGTCAGAC 988831 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||||| ||||||||||| ||| |||| | || |||||||| || ||| Sbjct 988832 AGAGTACGACCATCCTCAAGCTGCTTGCCGGCGAAGATCAGGCGTTGCTGGTCGGGTGGG 988891 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| || || ||||| | || | || || | ||||||| Sbjct 988892 ATGCCCTCCTTGTCCTGAATCTTACTCTTGACATTGTCGATGGTGTCAGATGACTCGACC 988951 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| || | ||| || || || ||||| || ||||| || ||||| Sbjct 988952 TCGAGAGTGATGGTCTTGCCAGTGAGAGTCTTGACGAAGATTTGCAT 988998 Score = 100 bits (110), Expect = 3e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | ||| || || | || | ||| || ||||| || |||||||| |||||| Sbjct 989000 CCGCCACGGAGACGGAGGACAAGGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGCTC 989059 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| || || ||||||||||| || |||| | ||| |||||||| ||||| Sbjct 989060 AAGGTGCGACCATCTTCGAGCTGCTTGCCAGCAAAGATGAGACGTTGCTGGTCAGGAGGA 989119 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| || || ||||| | || | || || | |||||||| Sbjct 989120 ATGCCTTCCTTGTCCTGAATCTTGCTCTTGACGTTGTCAATGGTGTCCGAGGACTCGACC 989179 Query 131188 TCGACGGTAACGGTTTTACCGGT 131210 || | ||| | ||| || ||||| Sbjct 989180 TCAAGGGTGATGGTCTTGCCGGT 989202 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| || ||||| || || | || |||||| |||||||||||||| Sbjct 988544 CCACCACGCAGGCGGAGCACCAAGTGCAGAGTGCTCTCCTTCTGAATGTTGTAATCTGAG 988603 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||| || | |||||||| ||| |||| || ||||| ||||| || ||| Sbjct 988604 AGCGTTCGTCCGTCTTCCAATTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCAGGTGGG 988663 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||| | | || | || || | || || | Sbjct 988664 ATACCCTCCTTGTCCTGGATCTTGCTCTTCACATTGTCGATGGTGTCTGACGATTCCACT 988723 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||||| || || ||||| || ||||| |||||||| Sbjct 988724 TCCAACGTGATAGTTTTGCCTGTGAGAGTCTTGACGAAGATCTGCAT 988770 >seq57 Length=1510414 Score = 98.7 bits (108), Expect = 9e-16 Identities = 105/138 (76%), Gaps = 3/138 (2%) Strand=Plus/Minus Query 131007 GCCACCGC---GCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATC 131063 |||||||| ||| ||| || || || || | ||||||||||| || ||||| || || Sbjct 1446768 GCCACCGCCACGCAGACGAAGGACCAAGTGAAGAGTCGACTCCTTCTGGATGTTATAGTC 1446709 Query 131064 GCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGG 131123 | | |||||| ||| || ||||||||||| ||| |||| | |||||||||||| || Sbjct 1446708 GGAGAGGGTGCGACCGTCTTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCGGG 1446649 Query 131124 AGGGATTCCTTCTTTGTC 131141 ||||| || || ||||| Sbjct 1446648 TGGGATGCCCTCCTTGTC 1446631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472012027079040