Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialophora_20attae_20[genbank_20GCA_5F001299255.1_202015-09-25] 131 sequences; 30,363,635 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq7 140 2e-28 seq46 118 7e-22 >seq7 Length=940 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 727 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 786 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 787 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 821 >seq46 Length=1539107 Score = 118 bits (130), Expect = 7e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||| | || || | |||||| || |||||||||||||| ||||| |||||||| || Sbjct 988543 ACCACCACGCAGGCGGAGCACCAAGTGCAGAGTGCTCTCCTTCTGAATGTTGTAATCTGA 988602 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 | ||| |||| || ||||| || ||||| || || | || ||||| || | || Sbjct 988603 GAGCGTTCGTCCGTCTTCCAATTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCAGGTGG 988662 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 || || || |||||| || || ||||||||| | || || ||| ||| || Sbjct 988663 GATACCCTCCTTGTCCTGGATCTTGCTCTTCACATTGTCGATGGTGTCTGACGATTCCAC 988722 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||| || || |||||||| || || | || || ||||| |||||||| Sbjct 988723 TTCCAACGTGATAGTTTTGCCTGTGAGAGTCTTGACGAAGATCTGCAT 988770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334946665235861