Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialophora_20attae_20[genbank_20GCA_5F001299255.1_202015-09-25] 131 sequences; 30,363,635 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq46 116 3e-21 seq48 87.8 2e-12 >seq46 Length=1539107 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || |||||| | || || ||| | ||||| | |||||||| ||||| Sbjct 988770 ATGCAGATCTTCGTCAAGACTCTCACAGGCAAAACTATCACGTTGGAAGTGGAATCGTCA 988711 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| ||||| || ||| ||||| || || || |||||||||||| Sbjct 988710 GACACCATCGACAATGTGAAGAGCAAGATCCAGGACAAGGAGGGTATCCCACCTGACCAA 988651 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || |||||||| ||||| ||||| | || || | |||||||| Sbjct 988650 CAGCGATTGATCTTCGCCGGCAAGCAATTGGAAGACGGACGAACGCTCTCAGATTACAAC 988591 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| || || ||| || || || ||||| Sbjct 988590 ATTCAGAAGGAGAGCACTCTGCACTTGGTGCT 988559 >seq48 Length=500340 Score = 87.8 bits (96), Expect = 2e-12 Identities = 123/170 (72%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 24998 AATGCAAATA--TTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 ||||| || | || || ||||| | || || || ||||||| |||| |||||||| Sbjct 102462 AATGCGAACAGCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTGGAGTCT 102403 Query 25056 TCTGACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 || ||||| || || || || ||| || ||| ||||| ||||| || ||||||| Sbjct 102402 TCAGACACCATTGA--CAATGTCAAGAGCAAGATCCAAGACAAGGAAGGCATCCCACCTG 102345 Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACT 25163 |||| || || | || || |||||||| ||| | ||||||| |||||| Sbjct 102344 ACCAGCAACGCCTGATCTTCGCCGGCAAGCAACTGGAAGATGGCCGCACT 102295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433327308164765