Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialophora_20attae_20[genbank_20GCA_5F001299255.1_202015-09-25] 131 sequences; 30,363,635 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq38 138 2e-27 seq73 122 2e-22 seq90 111 3e-19 seq2 89.7 1e-12 >seq38 Length=837193 Score = 138 bits (152), Expect = 2e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 279695 AGTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACT 279754 ||| || || || || ||||| |||||||||||||| || ||| | |||||||| || | Sbjct 761903 AGTCGGCTCCCTATCCGGTGGCTGGAAGATGAAGCTCGCTCTCGCCCGCGCCATGCTCAT 761962 Query 279755 GCGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGC 279814 ||| ||||| ||| | ||||| || |||||||| || || | ||| | ||||||| Sbjct 761963 GCGCGCCGACGTCTTCCTGCTCGACGAGCCAACTAATCATCTCGACGTCGCCAACGTCAA 762022 Query 279815 CTGGCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGA 279874 ||||| | | |||||| | || | | | | | |||||||| ||||| ||||| Sbjct 762023 ATGGCTCGAGAACTACCTCAACACCCACAGCGAAATCACCTCCCTCATCGTCTCCCACGA 762082 Query 279875 CTCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAA 279925 ||| |||||||| || ||||| ||| | |||||| ||||| || ||||| Sbjct 762083 CTCCGGCTTCCTCGACGCCGTCTGCACAAACATCATCCACTACGAACAAAA 762133 >seq73 Length=165115 Score = 122 bits (134), Expect = 2e-22 Identities = 552/858 (64%), Gaps = 29/858 (3%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTT-TGT 251621 |||||||| || | |||||| | |||||||| |||||||||||| |||||||| || Sbjct 158522 TCGAAGAAGTTTGTCTTGCCAGCGAGAGAGATGTTCTCCATGAAGTCAAAGGGGTTCTGA 158463 Query 251622 GGCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAG 251681 | | ||| | | |||||| | ||| | || |||| | ||| || || || ||||| | Sbjct 158462 GAC-TTGAAGTACTTGGGGTTGCCCATAGCGACGAGCAGGCGATCGGCGACGAACTCGAT 158404 Query 251682 ATACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGAT 251741 ||||| |||||| | | ||||||||| | | || || | || || || Sbjct 158403 GTACTGCTTCATCAGGTTGGCGTTCATGCCCAAGAGGGCGCAGGGGAGGGCGTCTGTGAG 158344 Query 251742 GAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAG 251801 ||| |||| ||| |||| || ||||| | | || |||| | | | || | Sbjct 158343 GAACTCCTGCTCGATGGCGACGGCCTCGACGATGATGGCCTGGATGGCTTCTTTTGAGGG 158284 Query 251802 CTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTCGCG 251861 || || || | ||| ||| || | | || | ||||| ||||||||||| Sbjct 158283 GCGGTGCTTGAGGTGGGAGAGCAGTAGGCAGGCGAAGTCGGTGTGCATGCCCTCGTCGCG 158224 Query 251862 ACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAGAA 251921 ||||| ||||||||| | ||||| ||||||| || || ||| |||||||||| Sbjct 158223 GGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATCAGACCGCGTTTCTTGAGCCAGAA 158164 Query 251922 GATTG-CGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAAGGC 251980 ||| | ||| ||||| || ||||| | | || ||||| | |||| || |||| Sbjct 158163 GATGGACGC-GAAGGAGCCGGAGAAGAAGATGCCTTCGACTGCGGCGAATGCGACGAGGC 158105 Query 251981 GCTCAGCAAA---CGA---CTTGTCCTGCGA--CAA-GAACTTCTGTGCCCATGCTGCCT 252031 ||| || || ||| ||||| | | || ||| | | ||||||| | |||| Sbjct 158104 GCTGCGCGAAGGTCGATTGCTTGT-CGGAGATCCAACGGA-----GTGCCCAGTCGGCCT 158051 Query 252032 TCTTTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGA-GAGAGTTC--CGCTCGGCAT 252088 |||| | | |||||| || ||||| || || |||| | | | || ||| || | Sbjct 158050 TCTTGCGGATACAGGGGATGGTGTCGATGGCGTCGAAGAGGTGTGATCGTTGCTTGGGGT 157991 Query 252089 CGTCCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGA 252148 || || |||| || || | || || |||||||| || || |||||| ||| | | Sbjct 157990 CG--CT-GATGTACGTGTCGATGAGCAGCGAGTACATTTCGGAGTGGATGTTTTCCATCA 157934 Query 252149 ACATCTGGTAAGCATAGAATAGACGCGCGGAAGGGTCGGTGACTTCCGTGGAAAAGTTGT 252208 |||||| | | ||||| |||||| ||| | ||| || ||| ||| | Sbjct 157933 TGATCTGGAAGCCGTAGAAGCAACGCGCTTCGGGGACCTGGACCTCGCCGGAGAAGCGCT 157874 Query 252209 TTGCAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTGA 252268 | |||||| | || ||||| ||| | || |||||| | || | | | Sbjct 157873 CGAGGAGGTTCTCGTTGACGATGCCGTCGGACGCGGCGAAGAAGGCGAGCACGTGTGAAA 157814 Query 252269 TGAAGTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCCTGATTCAGAG 252328 |||||| ||||| ||||||||||| || |||||| | || || |||| Sbjct 157813 TGAAGTACCGCTCGTCGTCGTTGAGGCGGTGGTGCCAGTGTTGTAGATCTTG--GGAGAG 157756 Query 252329 G--AACTTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACATTGCGAACACATC 252386 | |||||||| | |||||||| | | | || |||||||||||| | | || Sbjct 157755 GTCGACTTCTTCTGCGGTCCAGAAGCTAGCTTCTGCTTTCTTGTACATTTGCCAGATCTC 157696 Query 252387 AGGGTACTTGATTGGGAA 252404 | ||||||||| ||||| Sbjct 157695 ATGGTACTTGAGGGGGAA 157678 >seq90 Length=1302910 Score = 111 bits (122), Expect = 3e-19 Identities = 109/138 (79%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 280702 CTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCA- 280760 ||||||| ||||| || ||||| ||||| |||||| ||||| | ||| | | || Sbjct 489273 CTCACTCCCGCATGCGTGGTCTGTCTGGTGGCCAGCGTGTCAAGGTCGTCCTTGCCGCTT 489214 Query 280761 GCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGC 280820 || | |||||||| ||||||| ||||||| |||||||||||||| ||||| ||||||||| Sbjct 489213 GCAC-GTGGCAACGCCCTCACTTGATCGTCCTCGACGAGCCTACTAACTACCTGGACCGC 489155 Query 280821 GAGAGCCTGGGCGCTCTG 280838 || ||||| |||||| Sbjct 489154 GACTCGCTGGGTGCTCTG 489137 >seq2 Length=1003996 Score = 89.7 bits (98), Expect = 1e-12 Identities = 180/264 (68%), Gaps = 10/264 (4%) Strand=Plus/Minus Query 293115 CTGCGTCTGATCGACAAAGGCACCACGATCAGCAGCGAGGTCAATCACTGT-CTTCATAG 293173 ||| | |||||||| ||||||||||| |||||||| | | | || || | | | | Sbjct 557755 CTGAGACTGATCGATGAAGGCACCACGGTCAGCAGCCATCTGCAGAACAGTACGTTGT-G 557697 Query 293174 AGATCTCCCACGATGTCTTGTACACTGCCTTGACATCA----GGATGAATGCCAATAACC 293229 ||||||||||| ||||||||| | |||||||| ||| ||| | || | || Sbjct 557696 AGATCTCCCACACTGTCTTGTAAAGTGCCTTGATGTCAGCCGGGACGTTTGGC----ACA 557641 Query 293230 TTCTGGATAGACCCTCCGTTGGCAATAATCTGGTTCTTCATTGTCTCGGACCAAGTCCCA 293289 ||||||||||| || || | ||||| || |||||||||| | || ||||| || Sbjct 557640 TTCTGGATAGAGCCGCCCTCAGCAATGATGCGGTTCTTCATGTTGTCTGACCACAAGCCG 557581 Query 293290 CGAGCAATGAGCTCGCGGACAAGGTAAGAGTTGACAACGGGGAACTCACCAGCGAGAGTG 293349 || | | || || || || | | ||| ||||| ||||||| ||||| ||| Sbjct 557580 AGATCGACCAGGTCCTTGAGCAGCCAGGGGTTAACAACCTGGAACTCGCCAGCAAGAACT 557521 Query 293350 CGACGGCTGTAAATGTTCGAAGTG 293373 || || ||| ||||| || ||| Sbjct 557520 CGGCGAGAGTAGATGTTGGATGTG 557497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027835074840171