Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialophora_20attae_20[genbank_20GCA_5F001299255.1_202015-09-25] 131 sequences; 30,363,635 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq73 203 6e-47 seq46 188 1e-42 seq48 156 8e-33 seq57 118 2e-21 seq38 118 2e-21 seq90 96.9 6e-15 seq23 96.9 6e-15 >seq73 Length=165115 Score = 203 bits (224), Expect = 6e-47 Identities = 587/890 (66%), Gaps = 19/890 (2%) Strand=Plus/Minus Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994 |||||| || ||||||||||| || || || |||||||||||| | |||||| | Sbjct 158559 CATGACACCTGCCTTCTGGTAGTCACCGACACGCTTCTCGAAGAAGTTTGTCTTGCCAGC 158500 Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAACC 10054 ||| || ||| ||||||||||||||||||||||| | || | |||||||| || Sbjct 158499 GAGAGAGATGTTCTCCATGAAGTCAAAGGGGTTCTGAGACTTGAAGTACTTGGGGTTGCC 158440 Query 10055 GAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTT 10114 | || || | ||| || || ||||||||||||||||| ||||||||| | ||| Sbjct 158439 CATAGCGACGAGCAGGCGATCGGCGACGAACTCGATGTACTGCTTCATCAGGTTGGCGTT 158380 Query 10115 CATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCGC 10174 |||||| | | | |||||||| |||||| | ||| |||| ||| ||||||| || Sbjct 158379 CATGCCCAAGAGGGCGCAGGGGAGGGCGTCTGTGAGGAACTCCTGCTCGATGGCGACGGC 158320 Query 10175 TTCCTCGACGATGCTCTTTACCACGTCAAGGGACAGCTTGTTCTCGAGCTTCGAATACAG 10234 || ||| |||| || | | || || | || || ||| | || ||| Sbjct 158319 CTCGACGATGATGGCCTGGATGGCTTCTTTTGAGGGGCGGTGCTTGAGGTGGGAGAGCAG 158260 Query 10235 GAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACAAACC 10294 || | || | ||| | ||||||||||||| ||||| ||||||||| || Sbjct 158259 TAGGCAGGCGAAGTCGGTGTGCATGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGT 158200 Query 10295 CAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGG-CGCAGAACGACCCGGAGA 10353 || |||||||| || || || || |||||||| |||| ||| ||| || ||||||| Sbjct 158199 GAGGCCGGGCATCAGACCGCGTTTCTTGAGCCAGAAGATGGACGC-GAAGGAGCCGGAGA 158141 Query 10354 ACAGAAGA--CCCTCCACGCACACCCAGGCGACGAGGCGCTCTGCGAAGGAGCGGTCGC- 10410 |||||| || || || | | ||||||||||||| ||||||| || | || Sbjct 158140 --AGAAGATGCCTTCGACTGCGGCGAATGCGACGAGGCGCTGCGCGAAGG-TCGATTGCT 158084 Query 10411 --GCGAAAAGTATTTCGAG-GCCCACGCTGCCTTCTTTCCCACGGCAGGGATCGTCTCGA 10467 || | | ||| ||||| | |||||||| | | ||||| || |||| Sbjct 158083 TGTCGGAGATCCAACGGAGTGCCCAGTCGGCCTTCTTGCGGATACAGGGGATGGTGTCGA 158024 Query 10468 TAGCCTCGAAGAGCT-TGTT--ACGCTCGGTCTCGTCCTCA-ATAAGAGCATCAAGGAGC 10523 | || |||||||| | || | ||| || ||| || | || | | || | |||| Sbjct 158023 TGGCGTCGAAGAGGTGTGATCGTTGCTTGGGGTCG--CTGATGTACGTG--TCGATGAGC 157968 Query 10524 AGGGAGTATTGCTCGCTGTGGACGCTCTCATTGTACCCCTGGTAAGCGTAGAACATACGT 10583 || ||||| ||| ||||| | | || | |||| | ||||||| ||| Sbjct 157967 AGCGAGTACATTTCGGAGTGGATGTTTTCCATCATGATCTGGAAGCCGTAGAAGCAACGC 157908 Query 10584 GCCGAGGGGTCCGTGACTTCCTCGGCAAAGTTGTTGTTCAGGTTCTCCATCACCATGCCA 10643 || |||| || ||| || ||| ||| | | |||||||| | || ||||| Sbjct 157907 GCTTCGGGGACCTGGACCTCGCCGGAGAAGCGCTCGAGGAGGTTCTCGTTGACGATGCCG 157848 Query 10644 TCGCTGCCTGCAAAGAAGCCGAGGATGTGCTTGATGAAGTGGCGCTCATCATCGTTCAGT 10703 ||| | || |||||| |||| | ||| ||||||| ||||| || ||||| || Sbjct 157847 TCGGACGCGGCGAAGAAGGCGAGCACGTGTGAAATGAAGTACCGCTCGTCGTCGTTGAGG 157788 Query 10704 TTTTCACGCCAGTCTACCACATCCTGGTTGAGCTGGACCTCCTCCACGGTCCAGAAAGTG 10763 | |||||| | | ||| ||| ||| | ||| || || |||||||||| | Sbjct 157787 CGGTGGTGCCAGTGTTGTAGATCTTGGGAGAGGTCGACTTCTTCTGCGGTCCAGAAGCTA 157728 Query 10764 GCAACGGCCTTCTTGTACATCTGGAAAATGTCGGGGTACCGGATGGGGAA 10813 || | || ||||||||||| || | || || ||||| || |||||| Sbjct 157727 GCTTCTGCTTTCTTGTACATTTGCCAGATCTCATGGTACTTGAGGGGGAA 157678 >seq46 Length=1539107 Score = 188 bits (208), Expect = 1e-42 Identities = 178/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| |||| ||||||||||| || |||||||| |||||||| || || || Sbjct 988772 CCGCCACGAAGACGCAGCACCAAGTGTAGAGTAGACTCTTTCTGGATGTTGTAGTCAGAC 988831 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| |||||||| || || | ||| ||||||||||| Sbjct 988832 AGAGTACGACCATCCTCAAGCTGCTTGCCGGCGAAGATCAGGCGTTGCTGGTCGGGTGGG 988891 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| |||||||| |||||| ||||||||||| | ||| || || Sbjct 988892 ATGCCCTCCTTGTCCTGAATCTTACTCTTGACATTGTCGATGGTGTCAGATGACTCGACC 988951 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||| || || ||||| ||||||||||| || ||||| Sbjct 988952 TCGAGAGTGATGGTCTTGCCAGTGAGAGTCTTGACGAAGATTTGCAT 988998 Score = 179 bits (198), Expect = 7e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | |||||||| || ||| ||| || || ||||| ||||| ||| Sbjct 988544 CCACCACGCAGGCGGAGCACCAAGTGCAGAGTGCTCTCCTTCTGAATGTTGTAATCTGAG 988603 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || ||||| || ||||| |||||||| || | || |||||||| ||||| Sbjct 988604 AGCGTTCGTCCGTCTTCCAATTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCAGGTGGG 988663 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| ||| || ||||||||||||| ||||| ||| Sbjct 988664 ATACCCTCCTTGTCCTGGATCTTGCTCTTCACATTGTCGATGGTGTCTGACGATTCCACT 988723 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| ||||| ||||| || ||||| ||||||||||| |||||||| Sbjct 988724 TCCAACGTGATAGTTTTGCCTGTGAGAGTCTTGACGAAGATCTGCAT 988770 Score = 123 bits (136), Expect = 5e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | || | ||| || ||||| || || |||||||| || ||| Sbjct 989000 CCGCCACGGAGACGGAGGACAAGGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGCTC 989059 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | |||||||| | |||||| || || || ||||| | ||| ||||| || ||| Sbjct 989060 AAGGTGCGACCATCTTCGAGCTGCTTGCCAGCAAAGATGAGACGTTGCTGGTCAGGAGGA 989119 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||||||||||||| |||||||| ||||||| || |||||||| | || || || Sbjct 989120 ATGCCTTCCTTGTCCTGAATCTTGCTCTTGACGTTGTCAATGGTGTCCGAGGACTCGACC 989179 Query 68415 TCCAAGGTGATGGTTTTTCCCGT 68437 || | ||||||||| || || || Sbjct 989180 TCAAGGGTGATGGTCTTGCCGGT 989202 >seq48 Length=500340 Score = 156 bits (172), Expect = 8e-33 Identities = 142/179 (79%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 || ||||||||||| || || || || | |||||||| | ||||| |||||||| || Sbjct 102272 TTCTGGATGTTATAGTCTGATAGAGTGCGGCCATCTTCCAGTTGCTTGCCGGCGAAGATC 102331 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 || | ||| ||||| ||||| ||||||||||||||||| ||||| |||||| || Sbjct 102332 AGGCGTTGCTGGTCAGGTGGGATGCCTTCCTTGTCTTGGATCTTGCTCTTGACATTGTCA 102391 Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452 |||||||||| || || || || | ||||||||| || |||||||||||||||||||| Sbjct 102392 ATGGTGTCTGAAGACTCCACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAA 102450 >seq57 Length=1510414 Score = 118 bits (130), Expect = 2e-21 Identities = 107/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||||||| || || ||||| || ||||||||||| |||||| Sbjct 1446764 CCGCCACGCAGACGAAGGACCAAGTGAAGAGTCGACTCCTTCTGGATGTTATAGTCGGAG 1446705 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || ||||| | |||||| |||||||| ||||| | || ||||||||||| Sbjct 1446704 AGGGTGCGACCGTCTTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCGGGTGGG 1446645 Query 68355 ATGCCTTCCTTGTCT 68369 ||||| ||||||||| Sbjct 1446644 ATGCCCTCCTTGTCT 1446630 >seq38 Length=837193 Score = 118 bits (130), Expect = 2e-21 Identities = 150/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 225436 GCACACTGCGTCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACGACACGTTCG-TCA 225494 ||| || ||||| |||||||| ||||||||||| || |||| ||| | | |||| | Sbjct 762107 GCAGACGGCGTCGAGGAAGCCGGAGTCGTGGGAGACGATGAGGGAGGTGA-TTTCGCTGT 762049 Query 225495 GGCCCTTGAGGTGCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTT 225554 || ||||||| | ||||||| |||||| |||||| | || || || || | Sbjct 762048 GGGTGTTGAGGTAGTTCTCGAGCCATTTGACGTTGGCGACGTCGAGATGATTAGTTGGCT 761989 Query 225555 CGTCCAGAAGCAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTT 225614 |||| || || | || ||| || ||||| |||||||| | ||||| |||||||| | Sbjct 761988 CGTCGAGCAGGAAGACGTCGGCGCGCATGAGCATGGCGCGGGCGAGAGCGAGCTTCATCT 761929 Query 225615 TCCAGCCCCCGGACAGGGAGCCGA 225638 ||||||| ||||| |||||||||| Sbjct 761928 TCCAGCCACCGGATAGGGAGCCGA 761905 >seq90 Length=1302910 Score = 96.9 bits (106), Expect = 6e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 225514 GAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAGGATGTC 225573 ||||||| ||||| |||||||||||||||| || |||||||| || | ||||| || Sbjct 490554 GAGCCATTTGACGTTCTTGACGTCCATGTGGTTGGTGGGTTCGTCAAGCAAGAGGATATC 490613 Query 225574 AGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGACAGGGA 225633 || || || || ||||| | |||| |||||||||||||||||| || ||||| || Sbjct 490614 AGGCTCCTCGAAGACTGCGCGGGCAAGAGCCAGCTTCATTTTCCAGCCACCAGACAGAGA 490673 Query 225634 G 225634 | Sbjct 490674 G 490674 >seq23 Length=959784 Score = 96.9 bits (106), Expect = 6e-15 Identities = 294/452 (65%), Gaps = 8/452 (2%) Strand=Plus/Minus Query 175949 GCCAGGGGAAGTCTCCTTGATGTCTCCCTTGAACCCCCGATACCAAGGGGTCATTGGGAG 176008 |||||| |||||| ||| |||||||||||||| || ||||||| ||| || || Sbjct 340986 GCCAGGACCAGTCTCGGTGACCTCTCCCTTGAACCCACGGAACCAAGGTTGCATCGGCAG 340927 Query 176009 CATCGTCTCGTTGTTAATGAGGCGCTTCACATTGTCTACGATATCCTTGGGGTTGTAAGC 176068 | ||| || || ||| |||| ||||| ||||| || || ||| || Sbjct 340926 GAAGTCCTCACCATTCATCTTGCGTTTCAAGTTGTCCACGATCTCGACAGGATTGAAATT 340867 Query 176069 CGGAATGTTAGTGCTAAATCCTGTTCCTATTCCTGACGATCCATTCACCAGGAGAAACGG 176128 ||| ||| || | ||||| || || || || ||| || || || || | || Sbjct 340866 CGGGATGGATGTTGACCAACCTGTGCCAATGCCGTCCGCTCCGTTGACAAGCAGCATTGG 340807 Query 176129 GATGGTGGGAACATAGTATTCCGGTTCAATCCGGTCGCCGTCATCCTCGAGGTAGTTCAG 176188 | | ||||| ||||| ||||| || || | | ||||||| |||| |||| Sbjct 340806 CAGGATGGGAGCATAGATCTCCGGCTCGATGGTTTGGTCGTCATCGGTATTGTAGGTCAG 340747 Query 176189 CAGACGCTCGTCGGCCTTGTGGAAAATATCCCGGGTGTTGGGGGACAGTTGTGTGAAGAT 176248 |||| |||| || | | |||||| | | ||| | | || || || | || |||| Sbjct 340746 CAGAGGCTCATCTGACACGTGGAAGAGCTTCCGAGCGAATGGCGATAGGCGGGTATAGAT 340687 Query 176249 ATACCTAGCAGACGCACTGTCCTTGCCTCCGTGAAGGCGGGAACCGAATTGTCCGCGAGG 176308 ||||| || || ||| || ||||| || | | | |||||| | ||| |||| Sbjct 340686 GTACCTCGCCGATGCAGAATCGGCTCCTCCTTGCAATCTGCTACCGAAGTTTCC-TGAGG 340628 Query 176309 ----AAGAAGCAAATTGATGTTATTCGAACCCACGTAGTCTTGGGCCATTCCGACTATGG 176364 ||||| ||||||||| || || ||| ||| || |||| ||||| || | Sbjct 340627 GCTCGAGAAG---ATTGATGTTGTTGCTTCCGACGAAGTTCTGCGCCAGGCCGACGATCG 340571 Query 176365 CGCCCTGGAGAGACGCCTCGCCGTGGTGATAG 176396 || |||||| |||| ||||||||| |||||| Sbjct 340570 TGCTCTGGAGTGACGTCTCGCCGTGATGATAG 340539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921620890843320