Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialophora_20attae_20[genbank_20GCA_5F001299255.1_202015-09-25] 131 sequences; 30,363,635 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq73 360 4e-94 seq2 208 1e-48 >seq73 Length=165115 Score = 360 bits (398), Expect = 4e-94 Identities = 530/739 (72%), Gaps = 35/739 (5%) Strand=Plus/Plus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGG--TTCA 42480 || |||||||||||||| || |||||||| ||||| |||||||| || | || ||| Sbjct 157825 CTCGCCTTCTTCGCCGCGTCCGACGGCATCGTCAACGAGAACCT--CCTCGAGCGCTTCT 157882 Query 42481 TGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGA 42540 ||||| ||| | || ||||| |||||||||||||||||||| || || | Sbjct 157883 CCGGCGAGGTCCAGGTCCCCGAAGCGCGTTGCTTCTACGGCTTCCAGATCATGATGGAAA 157942 Query 42541 ACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCCCGTCG 42597 || | ||||| || ||||| | ||||||| ||||||||||| || ||| Sbjct 157943 ACATCCACTCCGAAATGTACTCG---CTGCTCATCGACACGTACATCAGCGACCCCAAGC 157999 Query 42598 AGCG-TAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGAC 42656 | || | || || ||| | ||||| || || || ||||| ||| |||||||| ||| Sbjct 158000 AACGATCACAC-CTCTTCGACGCCATCGACACCATCCCCTGTATCCGCAAGAAGGCCGAC 158058 Query 42657 TGGGCGCTCAACTGGATCGAGAGTCCCGAC--GCAA----CGTTCGGCGAGAGGCTGGTA 42710 ||||| ||| |||||| ||||| |||| | |||| || | || || Sbjct 158059 TGGGCACTCCGTTGGATCT------CCGACAAGCAATCGACCTTCGCGCAGCGCCTCGTC 158112 Query 42711 GCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTC 42770 || || |||| ||||| |||||||||||||| ||| ||||||| ||||||||||||||| Sbjct 158113 GCATTCGCCGCAGTCGAAGGCATCTTCTTCTCCGGCTCCTTCGCGTCCATCTTCTGGCTC 158172 Query 42771 AAGCAGAAGGTGTC-GATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGA 42829 ||| | | | ||| ||||||||| ||||||||||| ||||| |||||| | | ||||| Sbjct 158173 AAGAA-ACGCGGTCTGATGCCCGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGA 158231 Query 42830 GGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTC 42889 ||| |||| | ||||| |||||||| ||| |||| |||||||| |||| ||||| Sbjct 158232 GGGCATGCACACCGACTTCGCCTGCCTACTGCTCTC---CCACCTCAAGCACCGCCCCTC 158288 Query 42890 GAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCAC 42949 || || ||| |||||||||| |||||||| | |||||| ||||||||||||| Sbjct 158289 AAAAGAAGCCATCCAGGCCATCATCGTCGAGGCCGTCGCCATCGAGCAGGAGTTCCTCAC 158348 Query 42950 GCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCA 43009 | | || ||| |||| | ||||||||| | |||| ||| |||||||| | Sbjct 158349 AGACGCCCTCCCCTGCGCCCTCTTGGGCATGAACGCCAACCTGATGAAGCAGTACATCGA 158408 Query 43010 GTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGC---CTCTACAACACGCC 43066 || ||||||||| | || || | ||||| || || | || ||| | | Sbjct 158409 GTTCGTCGCCGATCGCCTGCTCGTCGCTATGGG---CAACCCCAAGTACTTCAAGTCTCA 158465 Query 43067 GTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAA 43126 | |||||| ||||| |||||||||||||| | | |||||||| ||||| |||||||| Sbjct 158466 GAACCCCTTTGACTTCATGGAGAACATCTCTCTCGCTGGCAAGACAAACTTCTTCGAGAA 158525 Query 43127 GCGCGTCGCCGACTACCAG 43145 ||| |||| ||||||||| Sbjct 158526 GCGTGTCGGTGACTACCAG 158544 >seq2 Length=1003996 Score = 208 bits (230), Expect = 1e-48 Identities = 631/970 (65%), Gaps = 30/970 (3%) Strand=Plus/Minus Query 244477 GAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCG 244536 |||| | ||||| || || || || || | |||||||||| ||||| |||| Sbjct 557173 GAAGGCATCGGCGAGACCTTGGACACCAAGACCGATGGGTCGGTGTCTGAAGTTGCTCTT 557114 Query 244537 CATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGAT 244596 | ||||||| || ||||| ||||| |||||| | |||||| | ||||||||| | Sbjct 557113 CTTGGCTTCTTCAACAGGGTAGTAGTTGATGTCGATGATCTTGTTCAAGTTGCGGGTCAC 557054 Query 244597 CATGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGT 244656 | | |||| ||| ||| | |||||||| || || ||| |||| Sbjct 557053 AACTTGAGCGACCTCGTGCAGACGACCGAAGTCGTATTCA-------CCACGGGACTGGT 557001 Query 244657 GATCCTCACAAACTCGTTGAGGGCGACGCTG--GCCAGGTTGCAGACGGCCACCTCCTCC 244714 | || || | || ||||| | |||| ||||||||| || ||||| ||| Sbjct 557000 CA-----ACGAATGC--TGGCAGCGACAAAGAAGCCAAGTTGCAGACAGCGACCTCATCC 556948 Query 244715 GAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGC 244774 | ||||||| || ||||| ||||| | ||| || | ||||||||| |||| Sbjct 556947 GGAGCAGTGTACTCGATGATCTCAGTGCACAAGTTGGAGCTCCGGATGGTGCCAAGGTTT 556888 Query 244775 TGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCG 244834 | || ||||||||| |||||| || ||||||||||||||| | || ||||| ||| Sbjct 556887 TTCTGGTTGGACTTGCGGTTGCAAGCATCCTTGTAGAGCATGTATGGGGTGCCGGTTTCG 556828 Query 244835 AGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTG 244894 ||| || |||| | | || |||||| | || |||| ||| | | | Sbjct 556827 GTCTGAGCCTCGAGAATGGCGTACCAGAGCTTTTGTGCTTTGATGGTCGACCTACCACGA 556768 Query 244895 CCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGG 244954 || ||| |||||| | ||||||||| ||||||||||| ||| | || || |||| Sbjct 556767 CCTTCTTGCTCGTATCTGGTGTACAGAGCCTCGAACTCTTCGCCGTACACATCAGCTAGA 556708 Query 244955 CCGGGGCACGACGCCGGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATG 245014 || |||||| |||||||| || |||| || | | || || | ||||||| Sbjct 556707 CCTGGGCACTCGTTTGGGCACATCAGTGTCCAATCTTGGTTCTTCTCCACACGCTGCATG 556648 Query 245015 AAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCA 245074 || | || || |||| | | | | ||| ||||| | | | ||| ||| ||| Sbjct 556647 AACAAATCAGGCGTCCACAAGCCGTAGAACAGGTCTCGAGCGCGGACCTCTTCCTTGCCG 556588 Query 245075 GTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACA 245134 |||||| | || | | ||| || |||| || ||||||| ||||| | ||| || Sbjct 556587 TGGTTCTTGCGTAGGTTGAGAAACTCGAAGATATCAGCGTGCCATGGCTCGAGGTACACG 556528 Query 245135 GCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGC----GCGTT 245190 || | || || || ||||||||||| || || | || | | ||||| ||| Sbjct 556527 GCAAATGCACCCGGACGCTTGTTGCCACCTTG----ATCAACATAGCGAGCAGTGTTGTT 556472 Query 245191 GAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGC 245250 ||||| | ||| | || | | ||| || ||| ||||| |||||| ||||||| Sbjct 556471 GAAGACTCTCAGCATGGGAATGAGGCCATTGGAGGTACCGTTTGTGCCCGCAATGTAGGA 556412 Query 245251 GCCCTTGCCCCTGAGGTTGCTGA---TGGACATGCCTAGTCCGCCGGCGTGCTTGGAGAT 245307 ||| || | | || | | ||| | || | || | || || || ||| ||||| Sbjct 556411 GCCAGTGGCACGGATGCAG-TGAGCGTTGAGA--CCAACACCACCAGCACTCTTTGAGAT 556355 Query 245308 GAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAG 245367 | ||| || |||||| || || ||||| || ||||||||||||||||||| || Sbjct 556354 CATGGCACATGTCTTGAGAGTATCGTAGATGCCATCAATGCTGTCCGACTTCATGTCGAT 556295 Query 245368 CAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGC 245427 || ||||| || ||||| || || | ||| ||| | |||||| || || ||| Sbjct 556294 GAGGAAGCAAGACGACAGTTGTGGGTGGGGCGTGCCAGCTGCGAACAGTGTTGGTGAGGC 556235 Query 245428 GTGGGTAAAG 245437 ||| || ||| Sbjct 556234 GTGTGTGAAG 556225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944337653644560