Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialophora_20attae_20[genbank_20GCA_5F001299255.1_202015-09-25] 131 sequences; 30,363,635 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq73 150 2e-31 seq46 93.3 4e-14 >seq73 Length=165115 Score = 150 bits (166), Expect = 2e-31 Identities = 307/452 (68%), Gaps = 23/452 (5%) Strand=Plus/Plus Query 52396 AGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCCGCCA 52455 ||||| | || || |||||| |||||| ||| | || || |||||| ||| || ||| Sbjct 158102 AGCGCCTCGTCGCATTCGCCGCAGTCGAAGGCATCTTCTTCTCCGGCTCCTTCGCGTCCA 158161 Query 52456 TCTTTTACATTAA--AACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTGAT 52513 |||| | | || |||| || | ||||||||||| || ||| ||||||| | || Sbjct 158162 TCTTCTGGCTCAAGAAACGC--GGTCTGATGCCCGGCCTCACCTTCTCCAACGAGCTCAT 158219 Query 52514 ATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCT------CTACTACAAGACGCG 52567 || |||||||| || ||||||| ||||| || ||||| || | || | || Sbjct 158220 CTCCCGCGACGAGGGCATGCACACCGACTTCGCCTGCCTACTGCTCTCCCACCTCAAGCA 158279 Query 52568 CGTGACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAGGAGGCGGTGGCTAT 52627 | || |||| || | |||| | ||| || ||||| || || || Sbjct 158280 CCGCCCCTCAAAA---------GAAGCCATCCAGGCCATCATCGTCGAGGCCGTCGCCAT 158330 Query 52628 CGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTC 52687 ||| ||||||| | || | ||| || || || || ||||||||||||| | Sbjct 158331 CGAGCAGGAGTTCCTCACAGACGCCCTCCCCTGCGCCCTCTTGGGCATGAACGCCAACCT 158390 Query 52688 CATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCT-CGGGC-AGCCA 52745 ||| ||||||||||||| || || ||||| ||| | || ||| |||| | || Sbjct 158391 GATGAAGCAGTACATCGAGTTCGTCGCCGATCGCCTGCTCGT--CGCTATGGGCAACCCC 158448 Query 52746 AAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAG 52805 ||||||||||| ||| || || ||||| || ||| | ||||| || || | |||||| Sbjct 158449 AAGTACTTCAAGTCTCAGAACCCCTTTGACTTCATGGAGAACATCTCTCTCGCTGGCAAG 158508 Query 52806 ACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 || ||||| ||||||||||| ||||| || || Sbjct 158509 ACAAACTTCTTCGAGAAGCGTGTCGGTGACTA 158540 >seq46 Length=1539107 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| || | ||||| || || |||| | ||||| || || ||||||||||| | Sbjct 988772 CCGCCACGAAGACGCAGCACCAAGTGTAGAGTAGACTCTTTCTGGATGTTGTAGTCAGAC 988831 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| ||||| || || || |||| |||| || || || ||||| || || Sbjct 988832 AGAGTACGACCATCCTCAAGCTGCTTGCCGGCGAAGATCAGGCGTTGCTGGTCGGGTGGG 988891 Query 138508 ATACCTTCTTTGTCGGTGATTTTT--TGTTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 || || || ||||| ||| | || | || |||| || | |||||| | ||||| | Sbjct 988892 ATGCCCTCCTTGTC-CTGAATCTTACTCTTGACATTG-TCGATGGTGTCAGATGACTCGA 988949 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||||| || | || || ||||| ||||| || || || || ||||| Sbjct 988950 CCTCGAGAGTGATGGTCTTGCCAGTGAGAGTCTTGACGAAGATTTGCAT 988998 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||| ||||||||||| || | || || ||| || | ||| || |||| | Sbjct 988579 CTCCTTCTGAATGTTGTAATCTGAGAGCGTTCGTCCGTCTTCCAATTGCTTGCCGGCGAA 988638 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGAT-TTTTTGTTTTAATT 138541 ||| | ||||||||||| || || ||||| || ||||| ||| || | || ||| Sbjct 988639 GATCAATCGCTGTTGGTCAGGTGGGATACCCTCCTTGTCCTGGATCTTGCTCTTCACATT 988698 Query 138542 GTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTA 138601 | || | |||||| | ||| ||||| || | ||| | ||||| || || ||||| || | Sbjct 988699 G-TCGATGGTGTCTGACGATTCCACTTCCAACGTGATAGTTTTGCCTGTGAGAGTCTTGA 988757 Query 138602 CAAAAATCTGCAT 138614 | || |||||||| Sbjct 988758 CGAAGATCTGCAT 988770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496261587370320