Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialophora_20attae_20[genbank_20GCA_5F001299255.1_202015-09-25] 131 sequences; 30,363,635 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq73 159 3e-34 seq46 122 8e-23 >seq73 Length=165115 Score = 159 bits (176), Expect = 3e-34 Identities = 307/445 (69%), Gaps = 27/445 (6%) Strand=Plus/Plus Query 47146 TCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCGGCGATATTTTA-- 47203 |||| |||||| ||||| ||| |||||||||| ||| ||| ||| | || || | Sbjct 158111 TCGCATTCGCCGCAGTCGAAGGCATCTTCTTCTCCGGCTCCTTCGCGTCCATCTTCTGGC 158170 Query 47204 -CATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAG 47262 || |||| | || | |||||||||||||| || ||||||||| ||||| | | Sbjct 158171 TCAAGAAACGC---GGTCTGATGCCCGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCG 158227 Query 47263 ACGAAGGCCTGCACACCAACTTTGCCTGTCT-CTACTA---CAACACTAGAGTCGA---T 47315 |||| ||| |||||||| |||| ||||| || || || || | | || || | Sbjct 158228 ACGAGGGCATGCACACCGACTTCGCCTGCCTACTGCTCTCCCACCTCAAGCACCGCCCCT 158287 Query 47316 CAAAAGTTGGACGTGCCCACCGTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATG 47375 |||||| | ||| | ||| | ||| | | ||| ||||||||||| ||| | Sbjct 158288 CAAAAGAAG-------CCATC--CAG-GCCATCATCGTCGAGGCCGTCGCCATCGAGCAG 158337 Query 47376 GAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGA 47435 ||||| || | || || || ||| | | |||| |||||||| | |||||| Sbjct 158338 GAGTTCCTCACAGACGCCCTCCCCTGCGCCCTCTTGGGCATGAACGCCAACCTGATGAAG 158397 Query 47436 AAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAG--TATCCCAAGATTT 47493 |||||||||| || |||||||| ||||||||||| |||| | | |||||| | Sbjct 158398 CAGTACATCGAGTTCGTCGCCGATCGCCTGCTCGT--CGCTATGGGCAACCCCAAGTACT 158455 Query 47494 ACCACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACT 47553 | | | |||| || || || || ||| | ||||| || |||| |||||||| |||| Sbjct 158456 TCAAGTCTCAGAACCCCTTTGACTTCATGGAGAACATCTCTCTCGCTGGCAAGACAAACT 158515 Query 47554 TTTTCGAGAAGCGCGTCGGCGAATA 47578 | ||||||||||| ||||| || || Sbjct 158516 TCTTCGAGAAGCGTGTCGGTGACTA 158540 >seq46 Length=1539107 Score = 122 bits (134), Expect = 8e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| |||||| |||| ||||||||||| || || ||||| || || || ||| | Sbjct 988784 CGCAGCACCAAGTGTAGAGTAGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGACCA 988843 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || || ||| |||||| || ||||| ||||| || |||||||||||| Sbjct 988844 TCCTCAAGCTGCTTGCCGGCGAAGATCAGGCGTTGCTGGTCGGGTGGGATGCCCTCCTTG 988903 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| || || ||||| | |||| |||||| | |||||| |||| || | Sbjct 988904 TCCTGAATCTTACTCTTGACATTGTCGATGGTGTCAGATGACTCGACCTCGAGAGTGATG 988963 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||||| || ||||| || || || || ||||| Sbjct 988964 GTCTTGCCAGTGAGAGTCTTGACGAAGATTTGCAT 988998 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||||| || | || ||| || ||||| |||||||| Sbjct 988544 CCACCACGCAGGCGGAGCACCAAGTGCAGAGTGCTCTCCTTCTGAATGTTGTAATCTGAG 988603 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||| || || || | || || || ||| ||||||||||||| || || || || Sbjct 988604 AGCGTTCGTCCGTCTTCCAATTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCAGGTGGG 988663 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || |||||||||||| ||| || ||| | | |||| |||||| | || ||| Sbjct 988664 ATACCCTCCTTGTCCTGGATCTTGCTCTTCACATTGTCGATGGTGTCTGACGATTCCACT 988723 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | |||||||| || ||||| || || || |||||||| Sbjct 988724 TCCAACGTGATAGTTTTGCCTGTGAGAGTCTTGACGAAGATCTGCAT 988770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475500021367440