Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialophora_20attae_20[genbank_20GCA_5F001299255.1_202015-09-25] 131 sequences; 30,363,635 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq2 239 6e-58 seq73 149 8e-31 seq23 104 3e-17 >seq2 Length=1003996 Score = 239 bits (264), Expect = 6e-58 Identities = 903/1399 (65%), Gaps = 41/1399 (3%) Strand=Plus/Minus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 |||||||||| ||||| ||||| ||||||||||||||||||||||| |||| ||| ||| Sbjct 557511 TAGATGTTGGATGTGTAAGGCTCGAAGCACTCATTGTTACCCAAGATCTGGGATGTTGAG 557452 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTT-- 116020 ||||| |||||||| |||| || || |||||| | |||| | | ||| | Sbjct 557451 GCTGTAGGCATGGGAGCCAGCAGCAGTGAGTTGCGAA----CACCGTGTTGA-GCGATAT 557397 Query 116021 ---CCTTGAGGGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTCCCACATATCAAACT 116077 |||| || | |||||||| | | | | | | | |||||| || ||| Sbjct 557396 CAGCCTTCAGCGAATCCCAGTCCCACAGGTCCGTAGGAGTGACATTCCACATGTCGTACT 557337 Query 116078 GGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTC-- 116135 ||||||| ||||| || | || || |||| | ||||||| || ||||| || ||| Sbjct 557336 GGAGGATGCCTTGTGAGACAGGTGAGCCCTGATATGTCTCGTACGGGCC---AAGCTCTT 557280 Query 116136 -CGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCAT 116194 ||||| | || | || ||| || || || || || |||||||| || | | Sbjct 557279 TCGCCAGTGCGCACGAAGCTGTGAGAGCAGCATGGTAGATAGTCTCAAAGATCTGTATGT 557220 Query 116195 TCAT-TGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCG 116253 | | ||||||| | || || ||||| | ||||| || || |||| ||| Sbjct 557219 TGAGCTGCCTTG-CTTCAGGAGAGTCAAATGGTAGACGAAGTGCAAGGAAGGCATCGGCG 557161 Query 116254 AGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCC 116313 |||||||||||||| || || || || || ||||| | || ||| || || Sbjct 557160 AGACCTTGGACACCAAGACCGATGGGTCGGTGTCTGAAGTTGCTCTTCTTGGCTTCTTCA 557101 Query 116314 ACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATT 116373 || || || | || | ||||| | | | || | || ||| ||||| | | || Sbjct 557100 ACAGGGTAGTAGTTGATGTCGATGATCTTGTTCAAGTTGCGGGTCACAACTTGAGCGACC 557041 Query 116374 TCATGAAGCTTTTCGTAATCAAA---ACTGCGAGTCTCTTCATTGACATACTTAGGAAGG 116430 || || || || | || | || || | || ||| || || || || || Sbjct 557040 TCGTGCAGACGACCGAAGTCGTATTCACCACGGGACTGGTCAACGA-ATGCT--GGCAGC 556984 Query 116431 GCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCC 116490 | | || |||| || || |||| | ||||||| | |||||||||| || || || Sbjct 556983 GACAAAGAAGCCAAGTTGCAGACAGCGACCTCATCCGGAGCAGTGTACTCGATGATCTCA 556924 Query 116491 GTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACAC 116550 || ||||| || || ||| |||||||| | ||| || || || ||||| ||| || Sbjct 556923 GTGCACAAGTTGGAGCTCCGGATGGTGCCAAGGTTTTTCTGGTTGGACTTGCGGTTGCAA 556864 Query 116551 GCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTC 116610 ||||||||||||||||| ||||| || || || || || || | || |||||| || | | Sbjct 556863 GCATCCTTGTAGAGCATGTATGGGGTGCCGGTTTCGGTCTGAGCCTCGAGAATGGCGTAC 556804 Query 116611 CATACATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAG 116670 || | | ||| | || | | | || || || | |||||| | ||||| Sbjct 556803 CAGAGCTTTTGTGCTTTGATGGTCGACCTACCACGACCTTCTTGCTCGTATCTGGTGTAC 556744 Query 116671 AGGGCCTCAAACTCTTCACC-CACAGCCTCTGAGAGCCCTGGTGCCTTATCTGGACAGAA 116729 || ||||| |||||||| || ||| | || | || ||||| || | ||| || | Sbjct 556743 AGAGCCTCGAACTCTTCGCCGTACA-CATCAGCTAGACCTGGGCACTCGTTTGGGCACAT 556685 Query 116730 GAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGC 116789 || | ||| | || ||| || |||| |||||| | || || |||| | || Sbjct 556684 CAGTGTCCAATCTTGGTTCTTCTCCACACGCTGCATGAACAAATCAGGCGTCCACA-AGC 556626 Query 116790 CG-AGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAA 116848 || |||| || || ||| ||| | ||||| | || || || || | | | || Sbjct 556625 CGTAGAACAGGTCTCGAGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGTAGGTTGAGAA 556566 Query 116849 AGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTG-ACCC-----CTTGC 116902 | || | |||||| |||||||| || || |||||||| || | || |||| |||| Sbjct 556565 ACTCGAAGATATCAGCGTGCCATGGCTCGAGGTACACGGCAAATGCACCCGGACGCTTG- 556507 Query 116903 GACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGA 116962 ||| | || | ||||| | || || ||| || || | ||||| ||||||| Sbjct 556506 --TTGCCACCTTGATCAACATAGCGAGCAGTGTTGTTGAAGACTCTCAGCATGGGAATGA 556449 Query 116963 TACCATCAGATTGGCCATTTGTCCCCCGAA--TACGAGACTTGTTGGCTCTGACATCGTG 117020 |||| || || ||||| ||| || || ||| | |||| | || ||| Sbjct 556448 GGCCATTGGAGGTACCGTTTGTGCCCGCAATGTAGGAGCC--AGTGGCACGGATGCAGTG 556391 Query 117021 GATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCC 117080 || | ||||| ||| || || | ||||||||| || || | ||||| | | Sbjct 556390 AGCGTTGAGACCAACACCACCAGCACTCTTTGAGATCATGGCACATGTCTTGAGAGTATC 556331 Query 117081 GTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGG 117140 |||||| ||||| || ||| ||| | ||||||||||||| ||||| |||||| Sbjct 556330 GTAGATGCCATCAATGCTGTCCGACTTCATGTCGATGAGGAAGCAAGACGACAGTTGTGG 556271 Query 117141 CCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGGGACAT 117200 || || ||||| ||| || ||||||| ||||| |||| | ||||||| Sbjct 556270 GTGGGGCGTGCCAGCTGCGAACAGTGTTGGTGAGGCGTGTGTGAAGGTCTTCTGGGACAA 556211 Query 117201 CTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCG 117260 | ||||||||| | | | || ||| || ||||| || || | | ||| || Sbjct 556210 GAGGTTGTAGGTCTCGATGGCCTTCTCAACGTCGTCACCGTGGATGCCAACAGCGACACG 556151 Query 117261 CATAAACATGTATTGGGGT 117279 ||| ||||||| || ||| Sbjct 556150 CATCAACATGTGCTGAGGT 556132 >seq73 Length=165115 Score = 149 bits (164), Expect = 8e-31 Identities = 566/871 (65%), Gaps = 17/871 (2%) Strand=Plus/Minus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 |||||| ||||| ||||||||||||||||||||||| ||| |||| ||| |||||||| Sbjct 158541 GTAGTCACCGACACGCTTCTCGAAGAAGTTTGTCTTGCCAGCGAGAGAGATGTTCTCCAT 158482 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGTT-GGCACCCCAATCTGTTTGAGGAGAC 127349 || ||||| ||||||| || || || | || || || || ||| || | Sbjct 158481 GAAGTCAAAGGGGTTCTGAGACTT-GAAGTACTTGGGGTTGCCCATAGCGACGAGCAGGC 158423 Query 127350 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 127409 |||| | |||| |||| ||||||| |||| | | |||||| || | |||| | Sbjct 158422 GATCGGCGACGAACTCGATGTACTGCTTCATCAGGTTGGCGTTCATGCCCAAGAGGGCGC 158363 Query 127410 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCGT 127469 | ||||| ||||| || |||| ||| ||| ||| | || || || | |||||| | Sbjct 158362 AGGGGAGGGCGTCTGTGAGGAACTCCTGCTCGATGGCGACGGCCTCGACGATGATGGCCT 158303 Query 127470 GAATAGTGTCCACCCCAGGTCTATTGCGTAAAGTCTTGAAGAG--TTCCACA-GCAAACT 127526 | || | | | ||| ||| | | | | | |||| | || || || | Sbjct 158302 GGAT-GGCTTCTTTTGAGGGGCGGTGCTTGAGG--TGGGAGAGCAGTAGGCAGGCGAAGT 158246 Query 127527 CTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGA 127586 | ||| | |||||||| ||||||||||| || || |||||| || || ||||| | Sbjct 158245 CGGTGTGCATGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATCA 158186 Query 127587 GACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCA 127646 |||| || ||||| | |||||| || | || ||||| ||||||||||| || || | Sbjct 158185 GACCGCGTTTCTTGAGCCAGAAGATGGACGCGAAGGAGCCGGAGAAGAAGATGCCTTCGA 158126 Query 127647 CACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCA-AACCACTTC 127705 | ||||| || | || |||| || |||| || |||| | | ||| Sbjct 158125 CTGCGGCGAATGCGACGAGGCGCTGCGCGAAGG-TCGATTGCTTGTCGGAGATCCAACGG 158067 Query 127706 ATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGA-GTTC 127764 | ||||| | ||||| || |||||| |||| ||| | ||| || || |||| || Sbjct 158066 AGTGCCCAGTCGGCCTTCTTGCGGATACAGGGGATGGTGTCGATGGCGTCGAAGAGGTGT 158007 Query 127765 CTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCGTG 127824 || || || || || |||||||| | || ||||| || || ||||| ||| Sbjct 158006 GATCGTTGCT-TGGGGTCGCTGATGTACGTGTCGATGAGCAGCGAGTACATTTCGGAGTG 157948 Query 127825 GACCATTT-CATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCT 127883 || ||| ||| || | ||| | ||||||| | ||||||||| | ||| |||| Sbjct 157947 GATGTTTTCCATCAT-GATCTGGAAGCCGTAGAAGCAACGCGCTTCGGGGACCTGGACCT 157889 Query 127884 CATCGGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACG 127943 | ||| || | || ||||| || || || |||||| | || || || | Sbjct 157888 CGCCGGAGAAGCGCTCGAGGAGGTTCTCGTTGACGATGCCGTCGGACGCGGCGAAGAAGG 157829 Query 127944 CCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCAG--GGT-CTTCCAGTCGTCGA 128000 | || | | ||||| | | | || | ||||| || ||| | ||||| | | Sbjct 157828 CGAGCACGTGTGAAATGAAGTACCGCTCGTCGTCGTTGAGGCGGTGGTGCCAGTGTTGTA 157769 Query 128001 GATCCTTTGAGAGATCTACCTCCTCCGCAGTCCAATTGCTCATTTGAGCCTTCTTATAGA 128060 |||| | ||||| || || || || || ||||| ||| || || ||||| || | Sbjct 157768 GATCTTGGGAGAGGTCGACTTCTTCTGCGGTCCAGAAGCTAGCTTCTGCTTTCTTGTACA 157709 Query 128061 GTTCCCAGAGGTGGGGATACTTCAGGGGGAA 128091 || ||||| | | ||||| |||||||| Sbjct 157708 TTTGCCAGATCTCATGGTACTTGAGGGGGAA 157678 >seq23 Length=959784 Score = 104 bits (114), Expect = 3e-17 Identities = 238/356 (67%), Gaps = 12/356 (3%) Strand=Plus/Minus Query 176621 TGGATCATATTGAGGATGAGACCCTTAATGTGTGAACCATCGTTATCCGCATCCGTCATA 176680 |||| | ||||| || ||| || || || || |||||| | |||| ||||||||| Sbjct 339968 TGGAGAAAATTGATGAGGAGTCCTTTGATATGACTACCATCATGATCCTGATCCGTCATG 339909 Query 176681 ATCATGAGCCGACCATAGCGAAGCTCGGAAAC---ATCTTGATAATCCTTACCTTGTTGA 176737 ||||| || | ||||| || || ||| ||| | ||| |||| |||||| Sbjct 339908 ATCATAAGGTGGCCATACCGCAG---GGACCGCGTATCCTCATAGACCTTCTTGTGTTGA 339852 Query 176738 AGACCCAAAATCTTCTTGAGATCATTGAACTCTTGGTTTGATGTGAGTTGCGCCACTGAA 176797 |||||||| | ||||| | |||||| ||| || | || || | || | | Sbjct 339851 AGACCCAAGAATGACTTGATAGCATTGATCTCAGCATTCTTCGAGATCTGATCAACGGTA 339792 Query 176798 GCGTCGCGGACATTTTTACACTTCCCGCGGAGAGGGAACACACCGTAGTGATCACGACCA 176857 |||||||| || || | ||| || || || |||||||||||| |||| || || Sbjct 339791 GCGTCGCGTACGTTAAGAATCTTTCCTCGAAGCGGGAACACACCGAAGTGGTCCGGAGAG 339732 Query 176858 ACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGCGGAATCACCCTCCGTCACGATGAGC 176917 || |||| ||||||| | || || ||| || || |||||||| || | |||||| Sbjct 339731 ACAACAGCACGACCAGCCATGGCAAGACCCTTGGCAGAGTCACCCTCAGTGAGGATGAGA 339672 Query 176918 GTACA---CTTTCCAGATTGTGCCGTCCCCGCCTTGTTCGCATCGTCCAACTTGGG 176970 || || | ||||| || || || || ||||| |||||| ||||||| || Sbjct 339671 GTGCAGAGATGGCCAGA---AGCAGTGCCAGCTTTGTTGGCATCGACCAACTTTGG 339619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613506195381960