Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialophora_20attae_20[genbank_20GCA_5F001299255.1_202015-09-25] 131 sequences; 30,363,635 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq2 307 1e-78 seq31 132 6e-26 >seq2 Length=1003996 Score = 307 bits (340), Expect = 1e-78 Identities = 789/1202 (66%), Gaps = 61/1202 (5%) Strand=Plus/Minus Query 7010 TCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTA 7069 ||||| | ||||| || || ||||| | || ||||| ||||| ||||| |||||||| Sbjct 678733 TCACCGGACAAGATAGCAGCCTGGACAGCAGCACCGTAGGCGACGGCCTCGTCGGGGTTG 678674 Query 7070 ATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGG 7129 || | | || | || || ||||| || | || || | ||| | ||||| || Sbjct 678673 ATGGATCGGTTGGGCTCCTTGCCGTTGAAGAAGTCGGAAACCATCTTCTGAATGCGAGGA 678614 Query 7130 ATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAG 7189 || || || || || || || | ||||| || | || || || |||||||| | Sbjct 678613 ATACGGGTGGAACCGCCAACGAGGACGATCTCGTGGACGGAGGACTTGTCGATCTTGGCA 678554 Query 7190 TCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCC 7249 || || || || || || ||||| ||||| | ||| ||||| || Sbjct 678553 TCGCGCAGGACACGCTCAACCGGCTCCATGGTGGAGCGGAAGAGATCCTGGCACAGCTCT 678494 Query 7250 TCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATT 7309 || || || |||||||| ||||| || ||||| || | || ||| | | || || || Sbjct 678493 TCGAAGCGAGCACGGGTGATGGAGGTGTAGAAGTCGATACCCTCGAAGAGAGAGTCGATC 678434 Query 7310 TCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGT 7369 || || | || ||||| | || || | || ||||| || ||||| || || || || Sbjct 678433 TCGATCGAGGTCTGTGCGGATGATGAGAGGGTACGCTTGGCACGCTCGCAAGCAGTGCGA 678374 Query 7370 AAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGT--------- 7420 | |||||| ||||| || | || | | | ||| ||||| ||||| | | Sbjct 678373 AGACGACGGAGGGCGCGAGCATTGCTGCTGAGATCCTTCTTGTGTTTCCCTGAAATACCG 678314 Query 7421 TTA--AACTCTTCAGA--------GAAGTG------------TCGAAGGAGT-CTCGAA- 7456 ||| ||| || || |||||| | ||| || | |||| Sbjct 678313 TTAGCAACCGTTGAGGCGGACTCTGAAGTGGAAAACTTACGCTTGAATTCGTTCACGAAG 678254 Query 7457 ------------------TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCT 7498 ||||||||||||||||||||||| || || || || || | Sbjct 678253 TGGTTGACCAGACGATTGTCGAAATCTTCACCACCCAAGTGAGTGTCACCAGCAGTGGAC 678194 Query 7499 TTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCC 7558 ||||||||||||||||| | |||||| | || | || ||||| || ||||| ||||| Sbjct 678193 TTGACTTCAAAGATACCCTCCTCAATGGTCAAGAGGGAGACATCGAAAGTACCGCCACCG 678134 Query 7559 AGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATA 7618 || || || ||||| ||||| || | || ||||| ||||||||||| ||||| Sbjct 678133 AGATCGAAGATGAGAACGTTGCGCTCACCCTCGGACTTCTTGTCGAGACCGTAGGCGATG 678074 Query 7619 GCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCC-GC 7677 || ||||| ||||| || || ||||| |||||| ||| || ||||| || | ||| || Sbjct 678073 GCAGCCGCAGTTGGCTCGTTGATAATTCGAAGAACGTTGAGACCAGCGAT-GAGGCCGGC 678015 Query 7678 ATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTC 7737 || || || || || ||||| || || || |||||||| ||||| ||||| || |||| Sbjct 678014 GTCCTTGGTAGCCTGACGTTGAGAGTCATTGAAGTAGGCAGGGACTGTTACAACAGCGTT 677955 Query 7738 CGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGA 7797 |||| | |||||| || ||||| || | ||| ||| ||||| | | ||| | Sbjct 677954 GTTGACCGTGCCACCGAGGTATGATTCAGCAGTCTCTCGCATCTTGGTCAAGATCATGGC 677895 Query 7798 TGAAATCTCTTCAGCCGCAAACTGTTTCGT-TTCACCGTTAAAATCAACTTCAATCATGG 7856 ||| |||||||| | | || || | || || || || || || |||| || | | Sbjct 677894 TGAGATCTCTTCTGGGGTGAA-GGTCTTGTCCTCGCCCTTGAATTCGACTTGAACGACTG 677836 Query 7857 GTTTATCCGCAGCACCGGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCT 7916 | || | | || | || ||||| | | | | |||||||| | || |||| Sbjct 677835 GCTTGT---CGGCCTTGTTGACGACCTTGAAGGGGAAGTGCTTCATATCAGCCTGTACCT 677779 Query 7917 GTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGT 7976 || ||||| | || || | ||||| ||||| || || ||||| | ||||| Sbjct 677778 CAGCATCGTTGAACTTGCGGCCAATCAACCGCTTCGCATCGAAGACAGTGTTGTGGGGGT 677719 Query 7977 TCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACG 8036 ||||||| || |||||||| || || ||||| ||||| || | || || || | Sbjct 677718 TCATGGCGACCTGATTCTTCGCGGCATCGCCGATGAGACGCTC---GGTGTCGGTGAAAG 677662 Query 8037 CGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGT 8096 ||||| |||| || || || || || |||||||| || || ||||| || | |||||| | Sbjct 677661 CGACGAACGAGGGAGTTGTGCGGTTACCTTGGTCATTGGCGATAATCTCAATGCGGTCAT 677602 Query 8097 TTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAATCAATACCGATTGCTTGAGTCA 8156 | | ||| ||| |||||||| || || || || | ||| |||||||| || ||| || Sbjct 677601 CTCGAAAGATGCCTACGCACGAGTAGGTCGTACCAAGATCGATACCGATAGCCGGAGCCA 677542 Query 8157 TT 8158 || Sbjct 677541 TT 677540 Score = 107 bits (118), Expect = 2e-18 Identities = 442/691 (64%), Gaps = 31/691 (4%) Strand=Plus/Minus Query 105319 ATCGTACCAACGTGTTTATGGTTCGACTTTTCATTACACGCGTCTTTGTAAAGCATATAT 105378 || || |||| || ||| ||||| ||||| || || || || ||||| ||||| ||| Sbjct 556902 ATGGTGCCAAGGTTTTTCTGGTTGGACTTGCGGTTGCAAGCATCCTTGTAGAGCATGTAT 556843 Query 105379 GGGGTTCCCGTTTCACTTTGGGATTTAATAATTGCTTTCCAAATCTCCGAAGCT-----G 105433 ||||| || ||||| | || | | | ||| || | ||| | || ||| | Sbjct 556842 GGGGTGCCGGTTTCGGTCTGAGCCTCGAGAATGGCGTACCAGAGCTTTTGTGCTTTGATG 556783 Query 105434 GTACAACTTTAGTTGCGATACCTTCAGATTCGTATTTCTCGTAAAGATCTTCAAACTCTT 105493 || | || ||| ||||| |||||| | ||| ||| | || ||||||| Sbjct 556782 GTCGACCTACCA---CGA--CCTTCTTGCTCGTATCTGGTGTACAGAGCCTCGAACTCTT 556728 Query 105494 TACCGTACACGTCTGAAAGACCCTTTGC-CTGATCAGGACAAAACAATGACCAATTACCA 105552 |||||||| || | ||||| | || || | || || | || || ||||| Sbjct 556727 CGCCGTACACATCAGCTAGACC-TGGGCACTCGTTTGGGCACATCAGTGTCCAATC---- 556673 Query 105553 TCGGAT----TCAACGCGTTTCATGAACAAATCTGGAATCCACATGGCTGAAAAGAGGTC 105608 | || | || || || | |||||||||||| || |||||| | | | || ||||| Sbjct 556672 TTGGTTCTTCTCCACACGCTGCATGAACAAATCAGGCGTCCACAAGCCGTAGAACAGGTC 556613 Query 105609 TCGACACCTCGCCTCTTCATCACCTTGATTCAAACGAATTTCGAGAAAATCGAGAATATC 105668 |||| | ||||||| | || || ||| || | | |||||| |||| ||||| Sbjct 556612 TCGAGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGTAGGTTGAGAAACTCGAAGATATC 556553 Query 105669 GGCGTGCCATGGTTCTAAATAGACTGC-AATAGACCCTTTACGACGC------CCCGCTT 105721 ||||||||||| || | || || || ||| |||| ||||| || ||| Sbjct 556552 AGCGTGCCATGGCTCGAGGTACACGGCAAATGCACCC----GGACGCTTGTTGCCACCTT 556497 Query 105722 GATTGACATATCTTGCGGTTGAGTTATACACTCGTAACATTGGAATAATACCATCGGATG 105781 ||| ||||| | || || ||| | |||| | ||| ||||| | |||| ||| | Sbjct 556496 GATCAACATAGCGAGCAGTGTTGTTGAAGACTCTCAGCATGGGAATGAGGCCATTGGAGG 556437 Query 105782 TTCCATTTGTTCCACGAATATGTGATTTATTTGCACGTACATCGTGAACGTGTAACCCAA 105841 | || ||||| || ||| | || | | ||||| | |||| ||| | |||| Sbjct 556436 TACCGTTTGTGCCCGCAATGTAGGAGCCAGTGGCACGGATGCAGTGAGCGTTGAGACCAA 556377 Query 105842 TACCCCCAGCCCACTTACTGATACGCGCACACTCTTTTACTGTATCGTAAATACCGTCGA 105901 ||| ||||| | ||| ||| ||||| || | |||||||| || || || | Sbjct 556376 CACCACCAGCACTCTTTGAGATCATGGCACATGTCTTGAGAGTATCGTAGATGCCATCAA 556317 Query 105902 TACTATCTTCCTTATTCGCAATCAGGAAACACGATGACATTTGTGGTCTGGGTGTACCAG 105961 | || || ||| | | || ||||| || || |||| |||||| ||| || |||| Sbjct 556316 TGCTGTCCGACTTCATGTCGATGAGGAAGCAAGACGACAGTTGTGGGTGGGGCGTGCCAG 556257 Query 105962 CATTGAACAGAGTTGGTGTTGCATGAATGAA 105992 | |||||| ||||||| || || |||| Sbjct 556256 CTGCGAACAGTGTTGGTGAGGCGTGTGTGAA 556226 >seq31 Length=945272 Score = 132 bits (146), Expect = 6e-26 Identities = 204/288 (71%), Gaps = 6/288 (2%) Strand=Plus/Plus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 ||| |||||||||||||| | || ||||| || || || || || || |||| || Sbjct 199423 ATCAAAATCTTCACCACCAAGATGAGTATCACCAGCCGTAGCCAGCACCTCGAAGACGCC 199482 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 | || || | | ||| ||||| || || |||||||||| || | || | Sbjct 199483 ATCATCGATCGAGAGAAGCGAGACATCGAATGTCCCACCACCCAAATCGTA---GACAAT 199539 Query 7576 GTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635 | || | | | || || ||||| | |||||| ||||| || || || || || ||||| Sbjct 199540 GATCTGA--GAC-TCGTTCTTCTTGTTGAGACCATACGCAATCGCGGCGGCAGTAGGTTC 199596 Query 7636 ATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCG 7695 || | || ||| || ||| |||||||| || ||| | ||||||||||| ||||||| Sbjct 199597 GTTGACAACACGCAGGATGTTGAGGCCAGCGATGGTTCCGGCATCTTTCGTAGCTTGTCT 199656 Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGAC 7743 || | |||||| ||||| ||||||||||| ||||| |||| ||||| Sbjct 199657 CTGGGCATCGTTGAAGTACGCCGGGACCGTGACGACAGCGTGGGTGAC 199704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635131759970040