Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialophora_20attae_20[genbank_20GCA_5F001299255.1_202015-09-25] 131 sequences; 30,363,635 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq2 176 6e-39 seq73 113 6e-20 seq49 105 8e-18 >seq2 Length=1003996 Score = 176 bits (194), Expect = 6e-39 Identities = 890/1401 (64%), Gaps = 47/1401 (3%) Strand=Plus/Plus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 || ||| ||||||| ||||| ||||| | || ||||| || || || |||| | Sbjct 556133 CCTCAGCACATGTTGATGCGTGTCGCTGTTGGCATCCACGGTGACGACGTTGAGAAGGCC 556192 Query 111672 TTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTTC 111731 | ||||| ||| || |||||| | |||| ||||| ||||||| || ||| Sbjct 556193 ATCGAGACCTACAACCTCTTGTCCCAGAAGACCTTCACACACGCCTCACCAACACTGTTC 556252 Query 111732 AACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGAT 111791 ||||| || || || ||| |||| ||| ||||| || | | ||| ||| Sbjct 556253 GCAGCTGGCACGCCCCACCCACAACTGTCGTCTTGCTTCCTCATCGACATGAAGTCGGAC 556312 Query 111792 TCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGT 111851 || ||||||| |||| ||||||| ||||||| ||||||||| | |||||| Sbjct 556313 AGCATTGATGGCATCTACGATACTCTCAAGACATGTGCCATGATCTCAAAGAGTGCTGGT 556372 Query 111852 GGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTA--TTAGAGGTACAA 111909 ||| | || | || || || | |||| | ||| || || || |||| Sbjct 556373 GGTGTTGGTCTCAACGCTCACTGCATCCGTGCCACT--GGCTCCTACATTGCGGGCACAA 556430 Query 111910 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 111969 | ||| || |||| | ||||| ||||| | || || ||| ||| || ||||||| Sbjct 556431 ACGGTACCTCCAATGGCCTCATTCCCATGCTGAGAGTCTTCAACAACACTGCTCGCTATG 556490 Query 111970 TAAACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGC 112023 | | |||| ||| ||||| ||| | | || || || || |||||||||| Sbjct 556491 TTGATCAAGGTGGCAACAAGCGTCC---GGGTGCATTTGCCGTGTACCTCGAGCCATGGC 556547 Query 112024 ACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGG--CGCG 112081 |||| |||||| | ||||| || | | || ||||| || | || |||| |||| Sbjct 556548 ACGCTGATATCTTCGAGTTTCTCAACCTACGCAAGAACCACGGCAAGGAAGAGGTCCGCG 556607 Query 112082 GTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGA 112141 | || || || |||| || | |||| || ||| | |||||| || | || ||| | Sbjct 556608 CT--CGAGACCTGTTCTACGGCTTGTGGACGCCTGATTTGTTCATGCAGCGTGTGGAGAA 556665 Query 112142 GAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGG 112201 || ||||| | || | || ||| || || || ||||| | |||| || Sbjct 556666 GAACCAAGATTGGACACTGATGTGCCCAAACGAGTGCCCAGGTCTAGCTGATGTGTACGG 556725 Query 112202 TGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGCGACGGT 112261 || ||||| || || || ||||| | |||||| ||||| |||| | | |||| | Sbjct 556726 CGAAGAGTTCGAGGCTCTGTACACCAGATACGAGCAAGAAGGTCGTGGTAGGTCGACCAT 556785 Query 112262 GCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATA 112321 ||| | | ||| | || |||||| || |||| ||||| || || || ||||| Sbjct 556786 CAAAGCACAAAAGCTCTGGTACGCCATTCTCGAGGCTCAGACCGAAACCGGCACCCCATA 556845 Query 112322 TATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAA 112381 ||||| ||||| || || || |||| ||| || || || || | || ||| Sbjct 556846 CATGCTCTACAAGGATGCTTGCAACCGCAAGTCCAACCAGAAAAACCTTGGCACCATCCG 556905 Query 112382 GAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTG 112441 ||| |||||| | || || || ||| | || | || | |||||| ||||| || Sbjct 556906 GAGCTCCAACTTGTGCACTGAGATCATCGAGTACACTGCTCCGGATGAGGTCGCTGTCTG 556965 Query 112442 TAACCTCGCATCAATCGCTCTCCCCAAGTAT--GTGGA----TCCAGAGACAAAGACATT 112495 ||| | || || | | || || || || || || ||| | | || || Sbjct 556966 CAACTTGGCTTCTTTGTCGCTGCC--AGCATTCGTTGACCAGTCCCGTGGTGAATAC--- 557020 Query 112496 TGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTAT 112555 || | | || ||||| || | || ||| || ||| | |||| | || Sbjct 557021 -GACTTCGGTCGTCTGCACGAGGTCGCTCAAGTTGTGACCCGCAACTTGAACAAGATCAT 557079 Query 112556 TGATAGAAATTTTTACCCCGTTG-AGACTGCTCGTAAATCTAATATGAGACACCGTCCAA 112614 || | || | ||||| |||| ||| | | | | | || | |||||||| || | Sbjct 557080 CGACATCAACTACTACCCTGTTGAAGAAGCCAAGAAGAGC-AACTTCAGACACCGACCCA 557138 Query 112615 TTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATT---CTTTGTCGCCACGCATTTG 112671 | ||||| ||||||||||||||||| |||| ||| || ||| ||| | |||||| Sbjct 557139 TCGGTCTTGGTGTCCAAGGTCTCGCCGATGCCTTCCTTGCACTTCGTCTAC---CATTTG 557195 Query 112672 ATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTC 112731 | || ||||| | | | |||| | || |||||||| || || || || |||| Sbjct 557196 ACTCTCCTGAAGCAAGGCAGCTCAACATACAGATCTTTGAGACTATCTACCATGCTGCTC 557255 Query 112732 T-TGAGGCGAGTTCGGAGTTGGC---AGAGGTTGATGGTCCATATGAAACCTTTGAGGGT 112787 | || || || | |||| |||| | ||| || || || || | | |||| Sbjct 557256 TCACAGCTTCGTGCGCA-CTGGCGAAAGAGCT---TGGCCCGTACGAGACATATCAGGGC 557311 Query 112788 TCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACC-AAGCTTCA 112846 || || | |||||||| | || || | || |||| |||| || | || | | | Sbjct 557312 TCACCTGTCTCACAAGGCATCCTCCAGTACGACATGT-GGAATGTCACTCCTACGGACCT 557370 Query 112847 CTACGACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTT 112906 | |||||||| | || |||| ||| | | ||| |||| ||| || | Sbjct 557371 GTGGGACTGGGATTCGCTGAAGGCTGATATCGCTCAACACGGTGTTCGCAACTCACTGCT 557430 Query 112907 GATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGA 112966 | |||| || ||||| |||||||| || | || ||||||||||| ||||| ||||| || Sbjct 557431 GCTGGCTCCCATGCCTACAGCCTCAACATCCCAGATCTTGGGTAACAATGAGTGCTTCGA 557490 Query 112967 ACCCTACACGACGAACATCTA 112987 || ||||| | |||||||| Sbjct 557491 GCCTTACACATCCAACATCTA 557511 >seq73 Length=165115 Score = 113 bits (124), Expect = 6e-20 Identities = 167/231 (72%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 102087 CAGCTCTTTGAAGCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATG 102146 || ||||| || |||||| | || | || ||||| | ||||| || || ||||| | Sbjct 158008 CACCTCTTCGACGCCATCGACACCATCCCCTGTATCCGCAAGAAGGCCGACTGGGCACTC 158067 Query 102147 AAGTGGTT-TGATACAA--AGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGT 102203 ||| | | |||| | ||| |||| || |||| ||| ||||||| || Sbjct 158068 CGTTGGATCTCCGACAAGCAATCGA---CCTTCGCGCAGCGCCTCGTCGCATTCGCCGCA 158124 Query 102204 GTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGG 102262 || || || ||||||||||| || |||||| ||| | || | ||||||||||| || || Sbjct 158125 GTCGAAGGCATCTTCTTCTCCGGCTCCTTC-GCGTCCATCTTCTGGCTCAAGAAACGCGG 158183 Query 102263 TCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGG 102313 ||| ||||| || ||| ||||||||||||||| ||||| || |||||||| Sbjct 158184 TCTGATGCCCGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGG 158234 >seq49 Length=431167 Score = 105 bits (116), Expect = 8e-18 Identities = 168/236 (71%), Gaps = 4/236 (2%) Strand=Plus/Plus Query 16055 CTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGT-TGATTTTCGCGAGCGA 16113 |||||| | ||||| || || || ||||||| |||||| ||| || | || |||||| Sbjct 400534 CTTTCCAATAGCATCGATTTCGTCGATGAAGATGATGCAGGGTGTGCTCTT-GCGAGCAT 400592 Query 16114 CTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTG 16173 | || |||||||| ||||| | || ||||| |||||||| ||||| || | || Sbjct 400593 TCGCGAAAAGATCCCGCACACGTGAAGGCCCGACACCGACAAACATTTCCACGAACTCTG 400652 Query 16174 CGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGA 16232 |||| || | || || || || ||| || || ||| ||||| || | ||| Sbjct 400653 ATCCGGA-CACGGAGAAAAATGGAACGCCAGACTCGCCAGCAGTGGCTTTAGCCAAGAGA 400711 Query 16233 GTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 16288 |||||||| ||||| ||| ||| | | || |||||||| |||||||||||||| Sbjct 400712 GTCTTACCGGTACCGGGCGGACCTGACAAGATAGCACCTCGAGGAATCTTGGCGCC 400767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620741383534320