Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialophora_20attae_20[genbank_20GCA_5F001299255.1_202015-09-25] 131 sequences; 30,363,635 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq2 246 4e-60 seq73 120 4e-22 seq12 86.0 7e-12 >seq2 Length=1003996 Score = 246 bits (272), Expect = 4e-60 Identities = 549/813 (68%), Gaps = 11/813 (1%) Strand=Plus/Minus Query 110329 GTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGA 110388 ||||| || | || || || ||||||||||| ||| ||| || | ||| ||||| Sbjct 556941 GTGTACTCGATGATCTCAGTGCACAAGTTGGAGCTCCGGATGGTGCCAAGGTTTTTCTGG 556882 Query 110389 TTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGT 110448 || || ||| |||||| |||||||| ||||||||||||||||| || ||||| ||||| Sbjct 556881 TTGGACTTGCGGTTGCAAGCATCCTTGTAGAGCATGTATGGGGTGCCGGTTTCGGTCTGA 556822 Query 110449 GACTTGAGAATGGCCTTCCATACATCGGCGGCGGGGACAGTTGCGTTAGCGAGACCTTCC 110508 | || ||||||||| | ||| | | || || || | || | ||||||| Sbjct 556821 GCCTCGAGAATGGCGTACCAGAGCTTTTGTGCTTTGATGGTCGACCTACCACGACCTTCT 556762 Query 110509 TCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTC 110568 | |||||| ||||||||| |||| || || | ||||||||||||| ||| ||| Sbjct 556761 TGCTCGTATCTGGTGTACAGAGCCTCGAACTCTTCGCCGTACACATCAGCTAGA-CCTGG 556703 Query 110569 GC-CTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAG 110627 || || || || || | || | ||||| | || ||| || | || |||||||| Sbjct 556702 GCACTCGTTTGGGCACATCAGTGTCCAATCTTGGTTCTTCTCCACACGCTGCATGAACAA 556643 Query 110628 GTCAGGAATCCACATCGCCG-AGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGT 110686 ||||| |||||| |||| |||| ||||| || || ||||||| | || |||| Sbjct 556642 ATCAGGCGTCCACA-AGCCGTAGAACAGGTCTCGAGCGCGGACCTCTTCCTTGCCGTGGT 556584 Query 110687 TGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGA 110746 | |||||| | | ||| || | |||||| | ||||||||| ||||| || || || | Sbjct 556583 TCTTGCGTAGGTTGAGAAACTCGAAGATATCAGCGTGCCATGGCTCGAGGTACACGGCAA 556524 Query 110747 TGGATCCCTTACG---ACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCC 110803 | ||| ||| || | || | ||||||||| || ||| |||||||| | Sbjct 556523 ATGCACCCGGACGCTTGTTGCCACCTTGATCAACATAGCGAGCAGTGTTGTTGAAGACTC 556464 Query 110804 TGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGG 110863 | ||||| ||||| | |||| ||| ||| ||||| ||| ||| ||| | ||| Sbjct 556463 TCAGCATGGGAATGAGGCCATTGGAGGTACCGTTTGTGCCCGCAATGTAGGAGCCAGTGG 556404 Query 110864 CACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACA-C 110922 |||| ||| ||| | | ||||| |||||| || | ||| || ||||| Sbjct 556403 CACGGATGCAGTGAGCGTTGAGACCAACACCACCAGCACTCTTTGAGATCATGGCACATG 556344 Query 110923 TCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAA 110982 ||| |||| ||| | || || |||||||| || | ||| || | || || |||||| Sbjct 556343 TCT-TGAGAGTATCGTAGATGCCATCAATGCTGTCCGACTTCATGTCGATGAGGAAGCAA 556285 Query 110983 GAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAAC 111042 || |||| || || | ||||| || || ||| ||||| |||| || || |||| Sbjct 556284 GACGACAGTTGTGGGTGGGGCGTGCCAGCTGCGAACAGTGTTGGTGAGGCGTGTGTGAA- 556226 Query 111043 AGACCT-TGGGACATCTTGTTGTATGTGTCGAGTGCGGAGGGTACATCTTTACCGTGAAT 111101 | | | ||||||| |||||| || |||| || || || | |||||| || Sbjct 556225 GGTCTTCTGGGACAAGAGGTTGTAGGTCTCGATGGCCTTCTCAACGTCGTCACCGTGGAT 556166 Query 111102 ACCAATGGCAACTCGCATGAACATATATTGAGG 111134 |||| || || ||||| ||||| | ||||| Sbjct 556165 GCCAACAGCGACACGCATCAACATGTGCTGAGG 556133 >seq73 Length=165115 Score = 120 bits (132), Expect = 4e-22 Identities = 355/539 (66%), Gaps = 15/539 (3%) Strand=Plus/Minus Query 119208 TAGTCACCCACCCTCTTTTCGAAGAAATTCGTCTTACCATCGAGTGAGATGTTTTCCATA 119267 |||||||| || | ||| |||||||| || ||||| ||| |||| |||||||| ||||| Sbjct 158540 TAGTCACCGACACGCTTCTCGAAGAAGTTTGTCTTGCCAGCGAGAGAGATGTTCTCCATG 158481 Query 119268 AAGTCAAAAGGATTTTTGGAGTTCCAG-ATTGGTGGTTGACCAACTTGTTTC-AGAAGAC 119325 |||||||| || || | || || || | | | ||||| ||| | | | || || | Sbjct 158480 AAGTCAAAGGGGTTCTGAGACTTGAAGTACTTGGGGTTGCCCA--TAGCGACGAGCAGGC 158423 Query 119326 GATCGGAGACATACTCGATATATTCGGACATCTTTTCCGAATTCATACCTATGAGATTAC 119385 |||||| ||| ||||||| || | |||| | | ||||| || | ||| | Sbjct 158422 GATCGGCGACGAACTCGATGTACTGCTTCATCAGGTTGGCGTTCATGCCCAAGAGGGCGC 158363 Query 119386 ACGGGAGAGCATCGAGGATGAAGTTCTTCTCGATCTCCACAGCTTCTTTCACGATGGAGT 119445 | ||||| || || || ||| | || |||||| | || || || | ||||| | Sbjct 158362 AGGGGAGGGCGTCTGTGAGGAACTCCTGCTCGATGGCGACGGCCTCGACGATGATGGCCT 158303 Query 119446 GAATAGTTTCTGTCGATGGTTTGTTTCTCAAGAGTTTAAACAACTCTACG---GCAAATT 119502 | || | |||| | || || || | ||| | | | | || | || || | Sbjct 158302 GGATGGCTTCTTTTGAGGGGCGGTGCTT---GAGGTGGGAGAGCAGTAGGCAGGCGAAGT 158246 Query 119503 CTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGA 119562 | || | || || || || ||||||||||| || |||| || || ||||| | Sbjct 158245 CGGTGTGCATGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATCA 158186 Query 119563 GTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCA 119622 | || | |||||| ||||| ||||||| || || || ||||||||||| || | Sbjct 158185 GACCGCGTTTCTTGAGCCAGAAGATGGACGCGAAGGAGCCGGAGAAGAAGATGCCTTCGA 158126 Query 119623 CACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGA-GACTTGTC---GAACCACTTG 119678 | |||||| |||| || |||| || |||||||| |||||| || ||| | Sbjct 158125 CTGCGGCGAATGCGACGAGGCGCTGCGC-GAAGGTCGATTGCTTGTCGGAGATCCAACGG 158067 Query 119679 AGAGCCCAGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAAAAGTTG 119737 || ||||||| |||||| || ||||||| || | |||||| ||||| || || Sbjct 158066 AGTGCCCAGTCGGCCTTCTTGCGGATACAGGGGATGGTGTCGATGGCGTCGAAGAGGTG 158008 >seq12 Length=978560 Score = 86.0 bits (94), Expect = 7e-12 Identities = 121/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 158479 TATGGGCGTGTGGCACCTCGTTCGGGTTTGGCTGTGAAGCACTGTATCAACGTTGGTGCG 158538 ||||||||| | ||||| || || || | || | ||| ||| ||| || ||||| Sbjct 261475 TATGGGCGTATCGCACCCCGGTCTGGACTCGCGGCCAAGAACTTCATCGACACAGGTGCT 261416 Query 158539 GGGGTCATCGATCCTGATTATACTGGAGAAGTCAAAGTCGTTCTCTTCAATCATGGAGAC 158598 ||||| || ||| | || ||| ||| || |||| || | | |||||||||| || Sbjct 261415 GGGGTGATTGATGCGGACTATCGTGGGGAGGTCAGGGTGTTGTTGTTCAATCATGCGGAG 261356 Query 158599 AAGGACTTTGAGGTTAAGAAGGGTGATCGCATCGCACAGCTTGTTCTAGA 158648 |||||||||||| |||||||| |||||| | || ||| | || || || Sbjct 261355 GGGGACTTTGAGGTGAAGAAGGGCGATCGCGTGGCGCAGTTGGTGCTGGA 261306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588975035551800