Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialophora_20attae_20[genbank_20GCA_5F001299255.1_202015-09-25] 131 sequences; 30,363,635 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq2 215 6e-51 seq49 82.4 9e-11 >seq2 Length=1003996 Score = 215 bits (238), Expect = 6e-51 Identities = 892/1395 (64%), Gaps = 33/1395 (2%) Strand=Plus/Minus Query 105935 TAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAG 105994 |||||||| | ||||| || || ||||| ||||| ||||||||||| || | || ||| Sbjct 557511 TAGATGTTGGATGTGTAAGGCTCGAAGCACTCATTGTTACCCAAGATCTGGGATGTTGAG 557452 Query 105995 GCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCC 106054 ||||| ||||| || |||| || || ||| |||| ||| | || ||| || Sbjct 557451 GCTGTAGGCATGGGAGCCAGCAGCAGTGAGTTGCGAACACCGTGTTGAGCGATATCAGCC 557392 Query 106055 TTGAGAACATCCCAGTCGTAGTTGAGCTT-GGTTTCACCTTCCCACATATCAAATTGAAG 106113 || || ||||||||| | | | | || | || |||| |||| || | || || Sbjct 557391 TTCAGCGAATCCCAGTCCCACAGGTCCGTAGGAGTGACATTCC-ACATGTCGTACTGGAG 557333 Query 106114 CACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAA 106173 | ||||| || || || |||| | ||||||| || | || | ||| |||| Sbjct 557332 GATGCCTTGTGAGACAGGTGAGCCCTGATATGTCTCGTACGGGCCAAGCTCTTTCGCCAG 557273 Query 106174 TTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTC 106233 | | || || || | || || || || || |||||||| | || | || Sbjct 557272 TGCGCACGAAGCTGTGAGAGCAGCATGGTAGATAGTCTCAAAGATCTGTATGTTGAGCTG 557213 Query 106234 CTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAA-AATAAATACATCCGCGAGACCTT 106292 | | |||||| || ||||||| |||| | | || || |||| |||||||||| Sbjct 557212 CCTTGCTTCAGGAGAGTCAAATG-GTAGACGAAGTGCAAGGAAGGCATCGGCGAGACCTT 557154 Query 106293 GAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGAT 106352 | ||||| | ||| || |||| ||||| | || ||| || ||||| || | Sbjct 557153 GGACACCAAGACCGATGGGTCGGTGTCTGAAGTTGCTCTTCTTGGCTTCTTCAACAGGGT 557094 Query 106353 AAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAA 106412 | | || |||| |||| ||| | || ||| |||| | | || || || | Sbjct 557093 AGTAGTTGATGTCGATGATCTTGTTCAAGTTGCGGGTCACAACTTGAGCGACCTCGTGCA 557034 Query 106413 GTTTT------TCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGA 106466 | || || ||| | || | || ||| || || || || || | | Sbjct 557033 GACGACCGAAGTCGTATTCACCA---CGGGACTGGTCAACGA-ATGCT--GGCAGCGACA 556980 Query 106467 TTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTAC 106526 || ||||| ||||| ||||| ||||||| | | |||||||| | || || || | Sbjct 556979 AAGAAGCCAAGTTGCAGACAGCGACCTCATCCGGAGCAGTGTACTCGATGATCTCAGTGC 556920 Query 106527 ACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCAT 106586 |||||||||| ||| || || || | || || ||||| ||| |||||| |||| Sbjct 556919 ACAAGTTGGAGCTCCGGATGGTGCCAAGGTTTTTCTGGTTGGACTTGCGGTTGCAAGCAT 556860 Query 106587 CCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA 106646 |||||||||||||||| || || || || || ||||| | || |||||| || | ||| | Sbjct 556859 CCTTGTAGAGCATGTATGGGGTGCCGGTTTCGGTCTGAGCCTCGAGAATGGCGTACCAGA 556800 Query 106647 -CATCGGCGGCTGGTACAATGG-CG--TTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAG 106702 | | | || | |||| || | | || || || |||||| | ||||| Sbjct 556799 GCTTTTG----TGCTTTGATGGTCGACCTACCACGACCTTCTTGCTCGTATCTGGTGTAC 556744 Query 106703 AGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAA 106762 || || || ||||| || || | | || | |||||||| || || ||| || | Sbjct 556743 AGAGCCTCGAACTCTTCGCCGTACACATCAGCTAGACCTGGGCACTCGTTTGGGCACATC 556684 Query 106763 AGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGAT 106822 || | ||| | || ||| || |||| |||||| | || || |||||| | Sbjct 556683 AGTGTCCAATCTTGGTTCTTCTCCACACGCTGCATGAACAAATCAGGCGTCCACAAGCCG 556624 Query 106823 GAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAAC 106882 | || || |||| | || ||||||| | || ||||| |||| | || ||| Sbjct 556623 TAGAACAGGTCTCGAGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGTAGGTTGAGAAAC 556564 Query 106883 TCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC--- 106939 || | |||||| |||||||||||||| || || || || | | ||| ||||| Sbjct 556563 TCGAAGATATCAGCGTGCCATGGCTCGAGGTACACGGCAAATGCACCC---GGACGCTTG 556507 Query 106940 ---CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATA 106996 ||| |||||| |||||||| || ||| ||| || || | ||||| ||||| | Sbjct 556506 TTGCCACCTTGATCAACATAGCGAGCAGTGTTGTTGAAGACTCTCAGCATGGGAATGAGG 556447 Query 106997 CCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATG 107056 |||| || ||| ||||| ||| ||| || | |||| | | || | Sbjct 556446 CCATTGGAGGTACCGTTTGTGCCCGCAATGTAGGAGCCAGTGGCACGGATGCAGTGAGCG 556387 Query 107057 TGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAG 107116 | | |||| ||| ||||| | ||||||||| ||||| | | ||||| | ||| Sbjct 556386 TTGAGACCAACACCACCAGCACTCTTTGAGATCATGGCACATGTCTTGAGAGTATCGTAG 556327 Query 107117 ATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTT 107176 || || | || |||| ||| || |||| ||||||||| |||| || || Sbjct 556326 ATGCCATCAATGCTGTCCGACTTCATGTCGATGAGGAAGCAAGACGACAGTTGTGGGTGG 556267 Query 107177 GGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTG 107236 || || ||||| ||| || ||||||| ||||| |||| | ||||||| | Sbjct 556266 GGCGTGCCAGCTGCGAACAGTGTTGGTGAGGCGTGTGTGAAGGTCTTCTGGGACAAGAGG 556207 Query 107237 TCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATA 107296 | ||| ||||| | | | |||| ||| || ||||||||||| | || |||||||| Sbjct 556206 TTGTAGGTCTCGATGGCCTTCTCAACGTCGTCACCGTGGATGCCAACAGCGACACGCATC 556147 Query 107297 AACATGTATTGGGGT 107311 ||||||| || ||| Sbjct 556146 AACATGTGCTGAGGT 556132 >seq49 Length=431167 Score = 82.4 bits (90), Expect = 9e-11 Identities = 163/236 (69%), Gaps = 4/236 (2%) Strand=Plus/Plus Query 9362 CTTTCCCACGGCATCAATCTCATCAATGAAGACAATACATGGT-TGATTTTCGCGGGCGA 9420 |||||| | ||||| || || || ||||||| || || ||| || | || ||| || Sbjct 400534 CTTTCCAATAGCATCGATTTCGTCGATGAAGATGATGCAGGGTGTGCTCTT-GCGAGCAT 400592 Query 9421 TTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTG 9480 | | || ||||| || || | | | || ||||| |||||||| ||||| || | || Sbjct 400593 TCGCGAAAAGATCCCGCACACGTGAAGGCCCGACACCGACAAACATTTCCACGAACTCTG 400652 Query 9481 CGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGA 9539 |||| || | || || || || ||| || || ||| ||||| || | ||| Sbjct 400653 ATCCGGA-CACGGAGAAAAATGGAACGCCAGACTCGCCAGCAGTGGCTTTAGCCAAGAGA 400711 Query 9540 GTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCC 9595 |||||||| ||||| ||| ||| | | || ||||| || |||||||||||||| Sbjct 400712 GTCTTACCGGTACCGGGCGGACCTGACAAGATAGCACCTCGAGGAATCTTGGCGCC 400767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589979833906440