Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialophora_20attae_20[genbank_20GCA_5F001299255.1_202015-09-25] 131 sequences; 30,363,635 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq73 288 2e-72 seq2 253 4e-62 >seq73 Length=165115 Score = 288 bits (318), Expect = 2e-72 Identities = 581/852 (68%), Gaps = 30/852 (4%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||||||||| || || | ||||| |||||||||||||| || | | ||||||||||| Sbjct 158544 CTGGTAGTCACCGACACGCTTCTCGAAGAAGTTTGTCTTGCCAGCGAGAGAGATGTTCTC 158485 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAG 47958 ||||||| |||||||| | | || | | | |||||| | ||||| Sbjct 158484 CATGAAGTCAAAGGGGTTCTGAGACTTGAAGTACTTGGGGTTGCCCATAGCGACGAGCAG 158425 Query 47959 GTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGA 48018 | |||| |||||| |||||||||| | ||| ||| || ||||||||| | ||||| Sbjct 158424 GCGATCGGCGACGAACTCGATGTACTGCTTCATCAGGTTGGCGTTCATGCCCAAGAGGGC 158365 Query 48019 CACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTG 48078 ||| | || | |||||| ||||||| ||| || ||||| || | | || Sbjct 158364 GCAGGGGAGGGCGTCTGTGAGGAACTCCTGCTCGATGGCGACGGCCTCGACGATGATGGC 158305 Query 48079 CTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCAT---AGAGCAT---GCA 48132 || | | | ||| |||| | || |||||||| | |||||| ||| Sbjct 158304 CTGGATG---GCTTCT-----TTTGAGGGGC-GGTGCTTGAGGTGGGAGAGCAGTAGGCA 158254 Query 48133 GGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACC 48192 ||| ||||| |||||| ||| ||||| ||| ||||||| ||||||||||| ||| || Sbjct 158253 GGCGAAGTCGGTGTGCATGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCC 158194 Query 48193 AGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGAT 48252 ||||| | || | | ||||||||||| || | |||||| ||||| ||||||||||| Sbjct 158193 GGGCATCAGACCGCGTTTCTTGAGCCAGAAGATGGACGCGAAGGAGCCGGAGAAGAAGAT 158134 Query 48253 GCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGAT 48312 ||| || ||||| ||||| ||| ||| | || |||| | | | |||||| ||||| Sbjct 158133 GCCTTCGACTGCGGCGAATGCGACGAGGCGCTGCGCGAAGGTCGATTGCTTGTCGGAGAT 158074 Query 48313 CCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAA 48372 ||| || |||||||| |||||||| ||| || || || || || ||||| ||| Sbjct 158073 CCAACGGAGTGCCCAGTCGGCCTTCTTGCGGATACAGGGGATGGTGTCGATGGCGTCGAA 158014 Query 48373 GAGCTTCTTGCAC-TCACCTGCGTCCGC-AACATAGGT---AGTGAGCAGCTTTGCGTAC 48427 ||| | || | | | || | ||| | || || |||||||| | |||| Sbjct 158013 GAGGT--GTGATCGTTGCTTGGGGTCGCTGATGTACGTGTCGATGAGCAGC---GAGTAC 157959 Query 48428 ATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAAC 48487 || || ||||| | || || || ||||||||| ||||||||| | || || Sbjct 157958 ATTTCGGAGTGGATGTTTTCCATCATGATCTGGAAGCCGTAGAAGCAACGCGCTTCGGGG 157899 Query 48488 ACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCA 48547 ||||| || || |||||| | ||| || || ||||| ||||| || || || || || Sbjct 157898 ACCTGGACCTCGCCGGAGAAGCGCTCGAGGAGGTTCTCGTTGACGATGCCGTCGGACGCG 157839 Query 48548 GCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGC----ATT 48603 || |||||||| || || ||| || ||| | ||||||| || | |||| || | Sbjct 157838 GCGAAGAAGGCGAGCACGTGTGAAATGAAGTACCGCTCGTCGTCGTTGAG-GCGGTGGTG 157780 Query 48604 CCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGC 48663 |||| |||| |||| | ||||| |||||||| | ||||||||| || ||| Sbjct 157779 CCAGTGTTGTAGATCTTGGGAGAGGTCGACTTCTTCTGCGGTCCAGAAGCTAGCTTCTGC 157720 Query 48664 TTTTTTGTACAT 48675 ||| |||||||| Sbjct 157719 TTTCTTGTACAT 157708 >seq2 Length=1003996 Score = 253 bits (280), Expect = 4e-62 Identities = 990/1536 (64%), Gaps = 49/1536 (3%) Strand=Plus/Minus Query 212887 CCAGGCACTTGACCAGGTGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCT 212946 ||||| ||||| ||| ||||| || | |||||| || || | || || | | Sbjct 557573 CCAGGTCCTTGAGCAGCCAGGGGTTAACAACCTGGAACTCGCCAGCAAGAACTCGGCGAG 557514 Query 212947 GGTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGC 213006 ||| | ||| || ||||| ||||||| || ||| ||||| |||| ||||| | || Sbjct 557513 AGTAGATGTTGGATGTGTAAGGCTCGAAGCACTCATTGTTACCCAAGATCTGGGATGTTG 557454 Query 213007 TGGCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGC 213066 |||||| ||||||||||||| ||| || ||| | || ||||| | |||| | Sbjct 557453 AGGCTGTAGGCATGGGAGCCAGCAGCAGTGAGTTGCGAACACCGTGTTGAGCGAT-ATCA 557395 Query 213067 GCCGA-AGCTCTGCCCAGTCCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATG 213125 ||| ||| |||||||||| ||||||| | || ||||||||| Sbjct 557394 GCCTTCAGCGAATCCCAGTCCCA---------CAGGTCCGTAGGAGTGACATTCCACATG 557344 Query 213126 TCAAACTGCAAGATGCCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGC 213185 || |||| | |||||||| || || |||||| || | ||| |||||| || Sbjct 557343 TCGTACTGGAGGATGCCTTGTGAGACAGGTGAGCCCTGATATGTCTCGTACGGGCCAAGC 557284 Query 213186 TCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCC 213245 || || ||||| |||| || || || ||||| | |||||| || ||||| |||| Sbjct 557283 TCTTTCGCCAGTGCGCACGAAGCTGTGAGAGCAGCATGGTAGATAGTCTCAAAGATCTGT 557224 Query 213246 CTGTTGAGCTTCTTGGCCTCTGGGGACGTGAAGGGCATCATCA-TGCGTTGGAACACATC 213304 ||||||||| | | || || || || || || | | ||| |||| |||| Sbjct 557223 ATGTTGAGCTGCCTTGCTTCAGGAGAGTCAAATGGTAGACGAAGTGCAA-GGAAGGCATC 557165 Query 213305 AGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTGGAGCACTC 213364 || || || ||||| || | |||||||||| |||||| | ||| ||| | || Sbjct 557164 GGCGAGACCTTGGACACCAAGACCGATGGGTCGGTGTCTGAAGTTGCTCTTCTTGGCTTC 557105 Query 213365 CTCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGT 213424 || | ||||| ||||| ||||||||||||||| | ||||||||| | |||| | Sbjct 557104 TTCAACAGGGTAGTAGTTGATGTCGATGATCTTGTTCAAGTTGCGGGTCACAACTTGAGC 557045 Query 213425 GACATGGGCCAG------GTACTCGTGATTGAACACGTAGCCCCCGTCCTGCACAAACTC 213478 ||| | | ||| | | |||| ||| | |||| | | ||| || || | Sbjct 557044 GACCTCGTGCAGACGACCGAAGTCGT-ATTCACCACG--GGACTGGTCA---ACGAATGC 556991 Query 213479 AGGCAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCAT 213538 ||||| | | |||| |||||| || || ||||| | | | |||||||| || Sbjct 556990 TGGCAGCGACAAAGAAGCCAAGTTGCAGACAGCGACCTCATCCGGAGCAGTGTACTCGAT 556931 Query 213539 GATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGC 213598 |||||| ||||||| |||| || ||||||||||| ||||| | ||||| ||||| Sbjct 556930 GATCTCAGTGCACAAGTTGGAGCTCCGGATGGTGCCAAGGTTTTTCTGGTTGGACTTGCG 556871 Query 213599 GTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTAT 213658 |||| || |||||||||||||||||| |||| ||||| || ||| | | | || || Sbjct 556870 GTTGCAAGCATCCTTGTAGAGCATGTATGGGGTGCCGGTTTCGGTCTGAGCCTCGAGAAT 556811 Query 213659 CTGGCTCCAGAGGTACCTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGCCTCGTA 213718 | |||||| | || |||| | ||| || | | | | |||||| Sbjct 556810 GGCGTACCAGAGCTTTTGTGCTTTGATGGTCGACCT-ACCACGACCTTCTT--GCTCGTA 556754 Query 213719 -CTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGGATG 213777 ||| | ||| || | | ||| || | ||| | || | || || || || Sbjct 556753 TCTGGT-GTACAGAGCCTCGAACTCTTCGCCGTACACATCAGCTAGACCTGGGCACTCGT 556695 Query 213778 CGGGACACATGAGGCTCCAGTCCCCG-TCATCTCTGACTCTCTGCATGAACAGGTCCGGG 213836 || ||||| || |||| || | || |||| || | ||||||||||| || || Sbjct 556694 TTGGGCACATCAGTGTCCAATCTTGGTTCTTCTC-CACACGCTGCATGAACAAATCAGGC 556636 Query 213837 ACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGC 213896 ||||| || ||||||||| | | | ||| ||| || ||| ||||| Sbjct 556635 GTCCACAAGCCGTAGAACAGGTCTCGAGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGT 556576 Query 213897 AGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCC 213956 || | ||||| || ||||| || |||||||| ||||| | ||| | |||||| || ||| Sbjct 556575 AGGTTGAGAAACTCGAAGATATCAGCGTGCCATGGCTCGAGGTACACGGCAAATGCACCC 556516 Query 213957 GGCCTCTTGCCGC--CCTGGTCCACCAGCCTGGCCACCA----TGTTGAAGATGCGCAGG 214010 || | |||| || ||| | | || | | || | || ||||||||| | ||| Sbjct 556515 GGACGCTTGTTGCCACCTTG---ATCAACATAGCGAGCAGTGTTGTTGAAGACTCTCAGC 556459 Query 214011 ACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTC 214070 | ||| | || || ||||| ||||| || ||||| || || ||||| | ||| | Sbjct 556458 ATGGGAATGAGGCCATTGGAGGTACCGTTTGTGCCCGCAATGTAGGAGCCAGTGGCACGG 556399 Query 214071 AGG--TTGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCC 214128 | | || | | |||| || | ||||| || ||| ||||||||||| || | Sbjct 556398 ATGCAGTGAGCGTTGAGA--CCAACACCACCAGCACTCTTTGAGATCATGGCACATGTCT 556341 Query 214129 TCACAGTCTCCATGATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCG 214188 | | ||| || |||||| | |||||||| | | || | | |||||| || Sbjct 556340 TGAGAGTATCGTAGATGCCATCAATGCTGTCCGACTTCATGTCGATGAGGAAGCAAGACG 556281 Query 214189 AGAGCTGGGGCCTGGACGAGCCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACT 214248 | || || || || || ||||| ||| || || || ||| || | | || Sbjct 556280 ACAGTTGTGGGTGGGGCGTGCCAGCTGCGAACAGTGTTGGTGAGGCGTGTGTGAAGGTCT 556221 Query 214249 TGTTAGAGAGGAGCCTGTAGGTCTCCAGGACTGAGGGGATGTCGTGCTTGTGGATCTGTA 214308 | | || | ||| |||||||||| | | | | ||||| |||||| | Sbjct 556220 TCTGGGACAAGAGGTTGTAGGTCTCGATGGCCTTCTCAACGTCGTCACCGTGGATGCCAA 556161 Query 214309 GAGCGCACCTCATCAGCATGTGCTGGGGCCTCTCTATGGGTCCT--TTGGGGCCCTTGAG 214366 |||| | ||||| ||||||||| || ||||| | ||| ||| | |||||| Sbjct 556160 CAGCGACACGCATCAACATGTGCTGAGG--TCTCTCGGCCACCTTCTTGCCGATCTTGAG 556103 Query 214367 CAGGTAGGAGCGCTCCAGAGTCTTGAACCCAAAGTA 214402 |||||| || ||||| || |||||||| || ||||| Sbjct 556102 CAGGTATGATCGCTCAAGTGTCTTGAAGCCGAAGTA 556067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931531274615040