Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialophora_20attae_20[genbank_20GCA_5F001299255.1_202015-09-25] 131 sequences; 30,363,635 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq2 188 1e-42 seq73 131 3e-25 >seq2 Length=1003996 Score = 188 bits (208), Expect = 1e-42 Identities = 816/1279 (64%), Gaps = 31/1279 (2%) Strand=Plus/Minus Query 221399 GCCTGGGCGCAAGACTGCGTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTG 221458 ||| | ||||| || || || ||||| |||||||| |||||||||||| ||||| Sbjct 557277 GCCAGTGCGCACGAAGCTGTGAGAGCAGCATGGTAGATAGTCTCAAAGATCTGTATGTTG 557218 Query 221459 AGTCTCTTGGCCTCGGGAGAAGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGT 221518 || | | || || ||||| || || | ||| || | ||| | ||||| || Sbjct 557217 AGCTGCCTTGCTTCAGGAGAGTCAAATGGTAGACGAAGTGCAAGGAAGGCATCGGCGAGA 557158 Query 221519 CCCTGTACTCCGATACCGATGGGCCTGTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACG 221578 || || || || | ||||||||| | |||||| |||| |||||| || Sbjct 557157 CCTTGGACACCAAGACCGATGGGTCGGTGTCTGAAGTTGCTCTTCTTGGCTTCTTCAACA 557098 Query 221579 GGATAAAAGTTGACGTCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCG 221638 || || |||||| |||||| | ||||| | ||| | || | |||| | | |||||| Sbjct 557097 GGGTAGTAGTTGATGTCGATGATCTTGTTCAAGTTGCGGGTCACAACTTGAGCGACCTCG 557038 Query 221639 GTCAGCTTCTGGTGATTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCG 221698 ||| || ||| | | || || | | ||| || || || || Sbjct 557037 TGCAGAC------GACCGAAGTCGTATTCACCACGGGACTGG------TCAACGAATGCT 556990 Query 221699 TTTAGGG-CAACGCTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTAT 221757 || | ||| | | ||| ||| || || || ||||| ||| || |||| || Sbjct 556989 GGCAGCGACAAAGAAG-CCAAGTTGCAGACAGCGACCTCATCCGGAGCAGTGTACTCGAT 556931 Query 221758 GATCTCTGTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCG 221817 |||||| || || | |||| || | |||||| || |||| || || || |||||||| Sbjct 556930 GATCTCAGTGCACAAGTTGGAGCTCCGGATGGTGCCAAGGTTTTTCTGGTTGGACTTGCG 556871 Query 221818 ATTGGCAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAAT 221877 ||| ||| |||||||||||||| | || ||| || || ||||||| | ||||| Sbjct 556870 GTTGCAAGCATCCTTGTAGAGCATGTATGGGGTGCCGGTTTCGGTCTGAGCCTCGAGAAT 556811 Query 221878 CTTGTCCCAGAGTTCTCTGGCGCTCACCGTCCTCTTGACTGCACCCTCGGTCTTT-TCAT 221936 || |||||| | | || | | ||| | | || | ||| |||| || | Sbjct 556810 GGCGTACCAGAGCTTTTGTGCTTTGATGGTCGACCT-ACCACGACCT---TCTTGCTCGT 556755 Query 221937 ACCCGGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGG 221996 | | ||| || || || |||| ||| |||||| | || | || ||||| ||| | Sbjct 556754 ATCTGGTGTACAGAGCCTCGAACTCTTCGCCGTACACATCAGCTAGACCTGGGCACTCGT 556695 Query 221997 CGGGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGA 222056 || |||||||| |||| | | ||| | | || | ||||||||| | || || Sbjct 556694 TTGGGCACATCAGTGTCCAATCTTGGTTCTTCTCCACACGCTGCATGAACAAATCAGGCG 556635 Query 222057 TCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCA 222116 |||||| | | || || |||| | || ||| ||| ||||| ||| || | | Sbjct 556634 TCCACAAGCCGTAGAACAGGTCTCGAGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGTA 556575 Query 222117 GATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGG 222176 | | | |||||| || || ||||||||||| ||||| || || ||||| | || || | Sbjct 556574 GGTTGAGAAACTCGAAGATATCAGCGTGCCATGGCTCGAGGTACACGGCAAATGCACCCG 556515 Query 222177 GTCGCTTGTTGCCACCCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTC 222235 | |||||||||||||| |||| || ||| ||| | |||||||| | || | Sbjct 556514 GACGCTTGTTGCCACCTTGAT-CAACATAGCGAGCAGTGTTGTTGAAGACTCTCAGCATG 556456 Query 222236 GGTACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGG 222295 || | || || ||||| |||||| |||||| |||||| | || ||| | || Sbjct 556455 GGAATGAGGCCATTGGAGGTACCGTTTGTGCCCGCAATGTAGGAGCCAGTGGCAC---GG 556399 Query 222296 TTACTGGCAGACATG---CCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTG 222352 | | | || || || | |||||| || || ||||||||||| || ||||| Sbjct 556398 ATGCAGTGAGCGTTGAGACCAACACCACCAGCACTCTTTGAGATCATGGCACATGTCTTG 556339 Query 222353 AGAGTGTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGAC 222412 ||||| || |||||| || || |||| ||| | || | || || ||||||||| Sbjct 556338 AGAGTATCGTAGATGCCATCAATGCTGTCCGACTTCATGTCGATGAGGAAGCAAGACGAC 556279 Query 222413 ATCTGAGATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCC 222472 | || | | || | | || ||||| || || ||||||||| ||| | Sbjct 556278 AGTTGTGGGTGGGGCGTGCCAGCTGCGAACAGTGTTGGTGAGGCGTGTGTGAAGGTCTTC 556219 Query 222473 CTAGACATCAGATCGTACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATG 222532 |||| || | ||| ||||| | | | | | | || ||| ||||| || | Sbjct 556218 TGGGACAAGAGGTTGTAGGTCTCGATGGCCTTCTCAACGTCGTCACCGTGGATGCCAACA 556159 Query 222533 GCGCATCTCATGTACATGTACTGGGGCCTCTCCACAGGACC--CTTGGAGCTGGAGAGCA 222590 ||| | ||| |||||| ||| || ||||| | ||| |||| | | ||||| Sbjct 556158 GCGACACGCATCAACATGTGCTGAGGTCTCTCGGC--CACCTTCTTGCCGATCTTGAGCA 556101 Query 222591 GGTACGATTTTTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAA 222650 |||| ||| || || |||||||| || ||||| | | || ||||||| | | | | Sbjct 556100 GGTATGATCGCTCAAGTGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCTCGGTCATAGA 556041 Query 222651 CCACGGCGGCGTCCAGCTC 222669 | | ||| | || ||||| Sbjct 556040 CGATGGCCGAGTTGAGCTC 556022 >seq73 Length=165115 Score = 131 bits (144), Expect = 3e-25 Identities = 473/736 (64%), Gaps = 21/736 (3%) Strand=Plus/Plus Query 25595 ACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGAT 25654 ||||| | || ||||| || || || || || || || |||||||| || |||| | | Sbjct 157820 ACGTGCTCGCCTTCTTCGCCGCGTCCGACGGCATCGTCAACGAGAACCTCCTCGAGCGCT 157879 Query 25655 TCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCG 25714 || || | || || ||| | || || || |||||||| |||||||| || | Sbjct 157880 TCTCCGGCGAGGTCCAGGTCCCCGAAGCGCGTTGCTTCTACGGCTTCCAGATCATGATGG 157939 Query 25715 AAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGACGTCG 25771 |||| | ||||| || |||| | ||| || || |||||||| ||| || | Sbjct 157940 AAAACATCCACTCCGAAATGTACTC---GCTGCTCATCGACACGTACAT--CAG-CGACC 157993 Query 25772 CCGAGAGA-GATCGG--CTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGG 25828 || || | |||| || || | |||||||| ||| ||| | ||| | ||||| Sbjct 157994 CCAAGCAACGATCACACCTCTTCGACGCCATCGACACCATCCCCTGTATCCGCAAGAAGG 158053 Query 25829 CGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAG 25888 | ||||| | |||||| | | || | || || | |||| || || | Sbjct 158054 CCGACTGGGCACTCCGTTGGATCTCCGACAAGCAATCGACCTTCGCGCAGCGCCTCGTCG 158113 Query 25889 CCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCA 25948 | || || || || || |||||||| ||| ||| || || ||| ||||||||||||||| Sbjct 158114 CATTCGCCGCAGTCGAAGGCATCTTCTTCTCCGGCTCCTTCGCGTCCATCTTCTGGCTCA 158173 Query 25949 AGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAG 26007 || | | | || | |||||||| || ||| ||||||||||||||| | | |||||| Sbjct 158174 AG-AAACGCGGTCTGATGCCCGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAG 158232 Query 26008 GGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCT 26067 || | |||| || || |||||||| || | | |||| | ||| || || Sbjct 158233 GGCATGCACACCGACTTCGCCTGCCTACTGCTCTC---CCACCTCAAGCACCGCCCCTCA 158289 Query 26068 CAAGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNN 26127 |||| || || | |||||| ||||| || | |||||| ||||||| | Sbjct 158290 AAAGAAGCCATCCAGGCCATCATCGTCGAGGCCGTCGCCATCGAGCAGGAGTTCCTCACA 158349 Query 26128 NNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAG 26187 ||||||||||| || || |||| || ||||| ||| Sbjct 158350 GACGCCCTCCCCTGCGCCCTCTTGGGCATGAACGCCAACCTGATGAAGCAGTACATCGAG 158409 Query 26188 TATGTGGCCGACCATCTGCT-GT-GCCAGCTGGGACTCGCCAGACTCTACAGTACGCCTA 26245 | || ||||| | ||||| || || | |||| | ||| || || | | | Sbjct 158410 TTCGTCGCCGATCGCCTGCTCGTCGCTA--TGGGCAACCCCAAGTACTTCAAGTCTCAGA 158467 Query 26246 ACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGA 26305 |||| || ||||| ||||| ||||| || | | || ||||| |||||||| || ||| Sbjct 158468 ACCCCTTTGACTTCATGGAGAACATCTCTCTCGCTGGCAAGACAAACTTCTTCGAGAAGC 158527 Query 26306 GGGTCGGCGACTATCA 26321 | ||||| ||||| || Sbjct 158528 GTGTCGGTGACTACCA 158543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928843279016640