Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialophora_20attae_20[genbank_20GCA_5F001299255.1_202015-09-25] 131 sequences; 30,363,635 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq123 140 4e-27 seq73 127 2e-23 seq2 116 5e-20 seq68 93.3 5e-13 >seq123 Length=1047575 Score = 140 bits (154), Expect = 4e-27 Identities = 95/107 (89%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 || ||||||||||||||||||||| ||||| | ||| |||| |||||| |||| || ||| Sbjct 347254 GCTGCCAACTACCTCGACATCAAGGCTCTGTTGGATGTTGGCTGCAAGACTGTCGCGAAC 347313 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACAT 1592292 ||||||||||||||||| |||||||||||||||||||| || ||||| Sbjct 347314 ATGATCAAGGGCAAGTCTCCCGAGGAGATCCGCAAGACTTTCAACAT 347360 >seq73 Length=165115 Score = 127 bits (140), Expect = 2e-23 Identities = 183/255 (72%), Gaps = 11/255 (4%) Strand=Plus/Minus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| || || || ||| |||||| ||||| |||||||| |||| ||||| Sbjct 158549 GCCTTCTGGTAGTCACCGACACGCTTCTCGAAGAAGTTTGTCTTGCCAGCGAGAGAGATG 158490 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTT-----TTCGCATCCGAGCG 868805 |||||| | || ||||| | | |||| ||| ||| | | ||| |||| Sbjct 158489 TTCTCCATGAAGTCAAAGGGGTTCTGAGACTTGAAGTACTTGGGGTTGCCCAT---AGCG 158433 Query 868806 ACGCGAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGC 868865 ||| |||||||| |||||||| |||||||||||||| ||| ||| ||||||||||| Sbjct 158432 ACG--AGCAGGCGATCGGCGACGAACTCGATGTACTGCTTCATCAGGTTGGCGTTCATGC 158375 Query 868866 CGATGAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGA 868925 | | ||| || || || | || | | ||||| | |||||| |||||||||||| Sbjct 158374 CCAAGAGGGCGCAGGGGAGGGCGTCTGTGAGGAACTCCTGCTCGATGGCGACGGCCTCGA 158315 Query 868926 CGATGATCTGCCTGG 868940 ||||||| |||||| Sbjct 158314 CGATGAT-GGCCTGG 158301 Score = 125 bits (138), Expect = 9e-23 Identities = 202/283 (71%), Gaps = 13/283 (5%) Strand=Plus/Minus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 || |||||||| ||| | |||||| |||| |||||||||||| || ||||| ||| Sbjct 158234 CCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATCAGACCGCGTTTC 158175 Query 869240 TTGAGCCAAAAGATGG-CGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 |||||||| ||||||| ||| ||| ||| ||||| |||||||| ||||| ||||| || Sbjct 158174 TTGAGCCAGAAGATGGACGC-GAAGGAGCCGGAGAAGAAGATGCCTTCGACTGCGGCGAA 158116 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGT---TGATCCACTTCATCGC 869355 ||| ||| |||| || ||| ||||| | ||||| |||||| | || Sbjct 158115 TGCGACGAGGCGCTGCGCGAAG--GTCGA----TTGCTTGTCGGAGATCCAACGGAGTGC 158062 Query 869356 CCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTG-GTCCT 869414 |||||||||||| || | | | || | |||||||||||| |||||||| | | Sbjct 158061 CCAGTCGGCCTTCTTGCGGATACAGGGGATGGTGTCGATGGCGTCGAAGAGGTGTGATCG 158002 Query 869415 TTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATA 869457 || | ||||| ||| || |||||||| || ||||| || Sbjct 158001 TTGC-TTGGGGTCGCTGATGTACGTGTCGATGAGCAGCGAGTA 157960 Score = 122 bits (134), Expect = 1e-21 Identities = 210/301 (70%), Gaps = 7/301 (2%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||||||||| || || ||||||||||||||| ||| | | | || | || ||| Sbjct 157952 GAGTGGATGTTTTCCATCATGATCTGGAAGCCGTAGAAGCAACGCGCTTCGGGGACCTGG 157893 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 ||||| ||| || || ||||||||| |||||||||||| |||||||| Sbjct 157892 ACCTCGCCGGAGAAGCGCTCGAGGAGGTTCTCGTTGACGATGCCGTCGGACGCGGCGAAG 157833 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGA-GCG--ACACCCAGTG- 869808 || || || ||||| || |||| |||||||||||| ||| ||| |||||| Sbjct 157832 AAGGCGAGCACGTGTGAAATGAAGTACCGCTCGTCGTCGTTGAGGCGGTGGTGCCAGTGT 157773 Query 869809 -GACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTT 869867 | | | | | | |||||| || || || |||||||||| || || || || | Sbjct 157772 TGTAGATCTTG--GGAGAGGTCGACTTCTTCTGCGGTCCAGAAGCTAGCTTCTGCTTTCT 157715 Query 869868 TGTACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTGT 869927 ||||||| | ||| | | ||||| || ||||||||||| |||||||||||||| | Sbjct 157714 TGTACATTTGCCAGATCTCATGGTACTTGAGGGGGAAGAGGACGAAGCGGTTGGGGTTTT 157655 Query 869928 C 869928 | Sbjct 157654 C 157654 >seq2 Length=1003996 Score = 116 bits (128), Expect = 5e-20 Identities = 173/243 (71%), Gaps = 2/243 (1%) Strand=Plus/Minus Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125 || || || ||||| || |||| ||| ||||| | |||||||| | |||||| ||||| Sbjct 556497 TGATCAACATAGCGAGCAGTGTTGTTGAAGACTCTCAGCATGGGAATGAGGCCATTGGAG 556438 Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCG 1630185 ||||| |||||||| | ||||| ||| | ||| || | ||| ||| | || Sbjct 556437 GTACCGTTTGTGCCCGCAATGTAGGAGCCAGTGGCACGGATGCAGTGAGCGTTGAGACCA 556378 Query 1630186 ATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGT-TTGAGCGTGTCGTAGATGCCCTC 1630244 | || || || ||| ||||| | || || ||| ||||| || ||||||||||| || Sbjct 556377 ACACCACCAGCACTCTTTGAGATCATGGCACA-TGTCTTGAGAGTATCGTAGATGCCATC 556319 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 || ||| | ||||||||| | ||| ||||| ||||| ||| ||||| | |||||| Sbjct 556318 AATGCTGTCCGACTTCATGTCGATGAGGAAGCAAGACGACAGTTGTGGGTGGGGCGTGCC 556259 Query 1630305 GGC 1630307 || Sbjct 556258 AGC 556256 Score = 89.7 bits (98), Expect = 6e-12 Identities = 112/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 1628447 GCATAAAGAGGTCACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCT 1628506 |||| || | ||| |||||||| |||| || ||||| || || ||| ||| |||| Sbjct 556652 GCATGAACAAATCAGGCGTCCACAAGCCGTAGAACAGGTCTCGAGCGCGGACCTCTTCCT 556593 Query 1628507 TGCCGTGGTTCTTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGT 1628566 ||||||||||||| |||| ||| | |||| || || |||||||| ||||| |||| Sbjct 556592 TGCCGTGGTTCTTGCGTAGGTTGAGAAACTCGAAGATATCAGCGTGCCATGGCTCGAGGT 556533 Query 1628567 AGCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 1628600 | |||||| || ||| |||||| ||| || Sbjct 556532 ACACGGCAAATGCACCCGGACGCTTGTTGCCACC 556499 >seq68 Length=1388079 Score = 93.3 bits (102), Expect = 5e-13 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 18088 GTCACCACCTTTGGCGAGTCGCACGGGGCGGGCGTCGGCTGCATCATCGACGGCGTGCCG 18147 |||||||||| |||||| || ||| | ||| || ||||| ||||||||||||| Sbjct 727827 GTCACCACCTATGGCGAATCCCACTGCCGCTCCGTAGGGTGCATAGTCGACGGCGTGCCA 727768 Query 18148 CCGTGCATGCCACTGGCCGAGGCCGACATCCAGCCTCAGTTGGATCGGCGCCGACCGGGC 18207 || | | || || | |||| ||| |||||||| ||| || || || || || || Sbjct 727767 CCCGGTCTCCCGCTCGACGAGAGCGATATCCAGCCACAGATGACACGCCGTCGTCCAGGG 727708 Query 18208 CAGGGCGCACTTTCCACGCCGCGCAACGAGCCCGATCGCGTCATCATCCAGTCGGGCACG 18267 ||| |||||| | || || ||||| || || ||||| |||||||| || ||| Sbjct 727707 CAGTCCGCACTCACGACACCACGCAATGAAAAGGACCGCGTGGAGATCCAGTCTGGTACG 727648 Query 18268 GAGAACGGCCTCACGCTCGGCTCGCC 18293 || ||| ||||||| ||| |||| Sbjct 727647 GAATTCGGAATCACGCTGGGCACGCC 727622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107128449526527