Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialophora_20attae_20[genbank_20GCA_5F001299255.1_202015-09-25] 131 sequences; 30,363,635 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq46 100 2e-16 >seq46 Length=1539107 Score = 100 bits (110), Expect = 2e-16 Identities = 154/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 |||||||||||| || || || || ||||| || ||||| || || | | || ||| Sbjct 988783 ACGCAGCACCAAGTGTAGAGTAGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGACC 988842 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || || || ||||| || | |||| | |||||| || || || || ||||| || Sbjct 988843 ATCCTCAAGCTGCTTGCCGGCGAAGATCAGGCGTTGCTGGTCGGGTGGGATGCCCTCCTT 988902 Query 29691 GTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 ||| || ||| || | |||||| | || | |||||||| || || || ||||| | Sbjct 988903 GTCCTG-AATCTTACTCTTGACATTGTCGATGGTGTCAGATGACTCGACCTCGAGAGTGA 988961 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || |||||||| | || || || || || ||||| Sbjct 988962 TGGTCTTGCCAGTGAGAGTCTTGACGAAGATTTGCAT 988998 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || |||||||| || || ||| || || |||||||| ||||| | | || || Sbjct 988556 CGGAGCACCAAGTGCAGAGTGCTCTCCTTCTGAATGTTGTAATCTGAGAGCGTTCGTCCG 988615 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || | ||| ||||| || | ||||||| || || || || || |||||||| ||| Sbjct 988616 TCTTCCAATTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCAGGTGGGATACCCTCCTTG 988675 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | || || ||| | || | ||||| || ||| ||||| | || ||| Sbjct 988676 TCCTGGATCTTGCTCTTCACATTGTCGATGGTGTCTGACGATTCCACTTCCAACGTGATA 988735 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||||| || | || || || || |||||||| Sbjct 988736 GTTTTGCCTGTGAGAGTCTTGACGAAGATCTGCAT 988770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385218584973471