Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialophora_20attae_20[genbank_20GCA_5F001299255.1_202015-09-25] 131 sequences; 30,363,635 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq2 187 3e-42 seq73 113 5e-20 seq49 105 8e-18 seq23 96.9 4e-15 >seq2 Length=1003996 Score = 187 bits (206), Expect = 3e-42 Identities = 888/1398 (64%), Gaps = 41/1398 (3%) Strand=Plus/Plus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| ||||||| ||||| || || | || || || || || ||| |||| | | Sbjct 556133 CCTCAGCACATGTTGATGCGTGTCGCTGTTGGCATCCACGGTGACGACGTTGAGAAGGCC 556192 Query 104282 TTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTC 104341 | ||||| ||| || ||||||| | |||| ||||| ||||||| || ||| Sbjct 556193 ATCGAGACCTACAACCTCTTGTCCCAGAAGACCTTCACACACGCCTCACCAACACTGTTC 556252 Query 104342 AATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGAC 104401 ||||| || || || ||| |||| ||||||||| |||| || ||| |||| Sbjct 556253 GCAGCTGGCACGCCCCACCCACAACTGTCGTCTTGCTTCCTCATCGACATGAAGTCGGAC 556312 Query 104402 TCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGG 104461 || | || ||||| | ||||| | | ||||| ||||||||| | ||||| Sbjct 556313 AGCATTGATGGCATCTACGATACTCTCAAGACATGTGCCATGATCTCAAAGAGTGCTGGT 556372 Query 104462 GGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAAT 104521 ||| |||| | || || | | |||| | || ||| ||| ||||| Sbjct 556373 GGTGTTGGTCTCAACGCTCACTGCATCCGTGCCACTGGCTCCTACATTGCGGGCACAAAC 556432 Query 104522 GGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTA 104581 ||| || |||| | ||||| ||||| | || || ||| ||| || |||||||| Sbjct 556433 GGTACCTCCAATGGCCTCATTCCCATGCTGAGAGTCTTCAACAACACTGCTCGCTATGTT 556492 Query 104582 AATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCAC 104635 |||||| ||| ||||| ||| | | || || || || |||||||||||| Sbjct 556493 GATCAAGGTGGCAACAAGCGTCC---GGGTGCATTTGCCGTGTACCTCGAGCCATGGCAC 556549 Query 104636 GCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGG--CGCGGT 104693 || |||||| | ||||| || | | || ||||| || | || |||| |||| | Sbjct 556550 GCTGATATCTTCGAGTTTCTCAACCTACGCAAGAACCACGGCAAGGAAGAGGTCCGCGCT 556609 Query 104694 GCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGA 104753 || || || |||| || | |||| || ||| | |||||| || | || ||| ||| Sbjct 556610 --CGAGACCTGTTCTACGGCTTGTGGACGCCTGATTTGTTCATGCAGCGTGTGGAGAAGA 556667 Query 104754 GTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTG 104813 ||||| | || | || ||| || || || ||||| | |||| || | Sbjct 556668 ACCAAGATTGGACACTGATGTGCCCAAACGAGTGCCCAGGTCTAGCTGATGTGTACGGCG 556727 Query 104814 AGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGGTGC 104873 | ||||| || || || ||||| | |||||| |||||||||| | | |||| | Sbjct 556728 AAGAGTTCGAGGCTCTGTACACCAGATACGAGCAAGAAGGTCGTGGTAGGTCGACCATCA 556787 Query 104874 CAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACA 104933 ||| | | ||| | || |||||| || |||| ||||| || || || ||||||| Sbjct 556788 AAGCACAAAAGCTCTGGTACGCCATTCTCGAGGCTCAGACCGAAACCGGCACCCCATACA 556847 Query 104934 TGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGA 104993 |||| ||||| || || || |||| ||| || || || || | || ||| || Sbjct 556848 TGCTCTACAAGGATGCTTGCAACCGCAAGTCCAACCAGAAAAACCTTGGCACCATCCGGA 556907 Query 104994 GTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTA 105053 | ||||| | || || || ||| | || | || | |||||| ||||| || | Sbjct 556908 GCTCCAACTTGTGCACTGAGATCATCGAGTACACTGCTCCGGATGAGGTCGCTGTCTGCA 556967 Query 105054 ACCTCGCATCAATCGCTCTCCCCAAGTAT--GTGGA----TCCAGAGACAAAGACATTTG 105107 || | || || | | || || || || || || ||| | | || || | Sbjct 556968 ACTTGGCTTCTTTGTCGCTGCC--AGCATTCGTTGACCAGTCCCGTGGTGAATAC----G 557021 Query 105108 ATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTG 105167 | | | || ||||| || | || ||| ||| ||| | |||| | || | Sbjct 557022 ACTTCGGTCGTCTGCACGAGGTCGCTCAAGTTGTGACCCGCAACTTGAACAAGATCATCG 557081 Query 105168 ATAGAAATTTTTACCCCGTTG-AGACTGCTCGTAAATCTAATATGAGACACCGTCCAATT 105226 | | || | ||||| |||| ||| | | | | | || | |||||||| || || Sbjct 557082 ACATCAACTACTACCCTGTTGAAGAAGCCAAGAAGAGC-AACTTCAGACACCGACCCATC 557140 Query 105227 GGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATT---CTTTGTCGCCACGCATTTGAT 105283 ||||| ||||| || |||||||| |||| ||| || ||| ||| | ||||||| Sbjct 557141 GGTCTTGGTGTCCAAGGTCTCGCCGATGCCTTCCTTGCACTTCGTCTAC---CATTTGAC 557197 Query 105284 TCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCT- 105342 || ||||| | | | |||| | || |||||||| || || || || ||||| Sbjct 557198 TCTCCTGAAGCAAGGCAGCTCAACATACAGATCTTTGAGACTATCTACCATGCTGCTCTC 557257 Query 105343 --TGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCT 105400 | || | || | | |||| | ||| || || || || | | |||| || Sbjct 557258 ACAGCTTCGTGCGCACTGGCGAAAGAGCT---TGGCCCGTACGAGACATATCAGGGCTCA 557314 Query 105401 CCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACC-AAGCTTCACTA 105459 || | |||||||| | || || | || |||| |||| || | || | | | | Sbjct 557315 CCTGTCTCACAAGGCATCCTCCAGTACGACATGT-GGAATGTCACTCCTACGGACCTGTG 557373 Query 105460 CGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCAT 105519 |||||||| | || |||| ||| | | ||| |||| ||| || || | Sbjct 557374 GGACTGGGATTCGCTGAAGGCTGATATCGCTCAACACGGTGTTCGCAACTCACTGCTGCT 557433 Query 105520 GGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACC 105579 |||||| ||||| |||||||| || | || ||||||||||| ||||| ||||| || || Sbjct 557434 GGCTCCCATGCCTACAGCCTCAACATCCCAGATCTTGGGTAACAATGAGTGCTTCGAGCC 557493 Query 105580 CTACACGACGAACATCTA 105597 ||||| | |||||||| Sbjct 557494 TTACACATCCAACATCTA 557511 >seq73 Length=165115 Score = 113 bits (124), Expect = 5e-20 Identities = 167/231 (72%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 94711 CAGCTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATG 94770 || ||||| || |||||| | || | || ||||| | ||||| || || ||||| | Sbjct 158008 CACCTCTTCGACGCCATCGACACCATCCCCTGTATCCGCAAGAAGGCCGACTGGGCACTC 158067 Query 94771 AAGTGGTT-TGATACAA--AGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGT 94827 ||| | | |||| | ||| |||| || |||| ||| ||||||| || Sbjct 158068 CGTTGGATCTCCGACAAGCAATCGA---CCTTCGCGCAGCGCCTCGTCGCATTCGCCGCA 158124 Query 94828 GTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGG 94886 || || || ||||||||||| || |||||| ||| | || | ||||||||||| || || Sbjct 158125 GTCGAAGGCATCTTCTTCTCCGGCTCCTTC-GCGTCCATCTTCTGGCTCAAGAAACGCGG 158183 Query 94887 TCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGG 94937 ||| ||||| || ||| ||||||||||||||| ||||| || |||||||| Sbjct 158184 TCTGATGCCCGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGG 158234 >seq49 Length=431167 Score = 105 bits (116), Expect = 8e-18 Identities = 168/236 (71%), Gaps = 4/236 (2%) Strand=Plus/Plus Query 9694 CTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGT-TGATTTTCGCGAGCGA 9752 |||||| | ||||| || || || ||||||| |||||| ||| || | || |||||| Sbjct 400534 CTTTCCAATAGCATCGATTTCGTCGATGAAGATGATGCAGGGTGTGCTCTT-GCGAGCAT 400592 Query 9753 CTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTG 9812 | || |||||||| ||||| | || ||||| |||||||| ||||| || | || Sbjct 400593 TCGCGAAAAGATCCCGCACACGTGAAGGCCCGACACCGACAAACATTTCCACGAACTCTG 400652 Query 9813 CGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGA 9871 |||| || | || || || || ||| || || ||| ||||| || | ||| Sbjct 400653 ATCCGGA-CACGGAGAAAAATGGAACGCCAGACTCGCCAGCAGTGGCTTTAGCCAAGAGA 400711 Query 9872 GTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 9927 |||||||| ||||| ||| ||| | | || |||||||| |||||||||||||| Sbjct 400712 GTCTTACCGGTACCGGGCGGACCTGACAAGATAGCACCTCGAGGAATCTTGGCGCC 400767 >seq23 Length=959784 Score = 96.9 bits (106), Expect = 4e-15 Identities = 233/349 (67%), Gaps = 13/349 (4%) Strand=Plus/Minus Query 169159 ATTGAGAATGAGACCCTTGATGTGGGAACCGTCGTTATCGGCATCCGTCATGATCATGAG 169218 ||||| | ||| || ||||| || ||| || | ||| ||||||||||||||| || Sbjct 339960 ATTGATGAGGAGTCCTTTGATATGACTACCATCATGATCCTGATCCGTCATGATCATAAG 339901 Query 169219 ACGACCATACCGAAGCTCGGAAAC---ATCTTGATAGTCCTTACCCTGTTGAAGACCCAA 169275 | |||||||| || ||| ||| | |||| |||| |||||||||||||| Sbjct 339900 GTGGCCATACCGCAG---GGACCGCGTATCCTCATAGACCTTCTTGTGTTGAAGACCCAA 339844 Query 169276 GATCTTCTTGAGATCGTTGAACTCTTGGTTTGATGTGAGCTGTGTGACAGAGGCATCGCG 169335 || ||||| | | |||| ||| || | || ||| || | || ||||| Sbjct 339843 GAATGACTTGATAGCATTGATCTCAGCATTCTTCGAGATCTGATCAACGGTAGCGTCGCG 339784 Query 169336 AACATTCTTACACTTCCCACGAAGAGGGAAGACACCGTAGTGATCACGACCAACGACGGA 169395 || || | ||| || ||||| ||||| |||||| |||| || || || || | Sbjct 339783 TACGTTAAGAATCTTTCCTCGAAGCGGGAACACACCGAAGTGGTCCGGAGAGACAACAGC 339724 Query 169396 GAGACCCGCGACTGCGAGAGTCTTCGCCGAGTCACCCTCGGTGACGATGAGCGTACA--- 169452 |||| || | || ||| ||| || ||||||||||| |||| |||||| || || Sbjct 339723 ACGACCAGCCATGGCAAGACCCTTGGCAGAGTCACCCTCAGTGAGGATGAGAGTGCAGAG 339664 Query 169453 TTTTCCAGATTGTGCCGTACCCGCCTTGTTCGCATCATCCAA-TTTGGG 169500 | ||||| || || || || ||||| ||||| |||| |||||| Sbjct 339663 ATGGCCAGA---AGCAGTGCCAGCTTTGTTGGCATCGACCAACTTTGGG 339618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583259844910440