Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialophora_20attae_20[genbank_20GCA_5F001299255.1_202015-09-25] 131 sequences; 30,363,635 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq2 188 2e-42 seq46 132 1e-25 >seq2 Length=1003996 Score = 188 bits (208), Expect = 2e-42 Identities = 489/736 (66%), Gaps = 17/736 (2%) Strand=Plus/Plus Query 349199 GCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGT 349258 ||||| || |||||| | ||||| || || || || || | | | | | |||| || Sbjct 677550 GCTATCGGTATCGATCTTGGTACGACCTACTCGTGCGTAGGCATCTTTCGAGATGACCGC 677609 Query 349259 GTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACC 349318 | || || || || ||||| ||||||||| | ||||| || || | ||| || || ||| Sbjct 677610 ATTGAGATTATCGCCAATGACCAAGGTAACCGCACAACTCCCTCGTTCGTCGCTTTCACC 677669 Query 349319 GAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAAT 349378 || || |||||| | || || ||| | || || ||||| | || || || | || Sbjct 677670 GACACCGAGCGTCTCATCGGCGATGCCGCGAAGAATCAGGTCGCCATGAACCCCCACAAC 677729 Query 349379 ACGGTTTTTGATGCTAAGCGACTTATTGGTAG-AAGTTTTTCTGA--CAAATCTACACAA 349435 || || || ||||| ||||| | ||||| | ||||| | || | | |||| Sbjct 677730 ACTGTCTTCGATGCGAAGCGGTTGATTGGCCGCAAGTTCAAC-GATGCTGAGGTACAGG- 677787 Query 349436 TCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATT 349495 ||||| | || || || || || | || || ||| | | | || || ||| | || Sbjct 677788 -CTGATATGAAGCACTTCCCCTTCAAGGTCGT--CAACA-AGGCCGACAAGCCAGTCGTT 677843 Query 349496 GAGGTTGAATATAAAGGTGA--ACAAAAACAATTTTTACCC--GAAGAAATTTCATCAAT 349551 | || |||| || || || |||| | | || |||| ||||| || ||| | || Sbjct 677844 CAAGTCGAATTCAAGGGCGAGGACAAGACC----TTCACCCCAGAAGAGATCTCAGCCAT 677899 Query 349552 GGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGC 349611 | | || || ||| || | ||||||| |||| | |||| || || | | || Sbjct 677900 GATCTTGACCAAGATGCGAGAGACTGCTGAATCATACCTCGGTGGCACGGTCAACAACGC 677959 Query 349612 TGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGG 349671 |||| | || || || ||||| || ||||| | || ||| || || || || || || Sbjct 677960 TGTTGTAACAGTCCCTGCCTACTTCAATGACTCTCAACGTCAGGCTACCAAGGACGCCGG 678019 Query 349672 CAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGC 349731 | ||| || || | || ||||| |||| || || || || ||||| || || || || Sbjct 678020 CCTCATCGCTGGTCTCAACGTTCTTCGAATTATCAACGAGCCAACTGCGGCTGCCATCGC 678079 Query 349732 ATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGG 349791 || || || || || | | || || || |||| || || ||| | ||||| Sbjct 678080 CTACGGTCTCGACAAGAAGTCCGAGGGTGAGCGCAACGTTCTCATCTTCGATCTCGGTGG 678139 Query 349792 TGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAAC 349851 |||||||| ||||| || || | || |||| ||||| || |||||||| || | || Sbjct 678140 CGGTACTTTCGATGTCTCCCTCTTGACCATTGAGGAGGGTATCTTTGAAGTCAAGTCCAC 678199 Query 349852 TGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGT 349911 ||||||||| || || | ||||| |||||||| || |||||||| || || || || Sbjct 678200 TGCTGGTGACACTCACTTGGGTGGTGAAGATTTCGACAATCGTCTGGTCAACCACTTCGT 678259 Query 349912 TAAAGAATTTAAGCGT 349927 || ||||| |||||| Sbjct 678260 GAACGAATTCAAGCGT 678275 >seq46 Length=1539107 Score = 132 bits (146), Expect = 1e-25 Identities = 158/212 (75%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||| ||||| | | || ||||| ||||| || || || || || || || | Sbjct 988992 TTTGCATACCGCCACGGAGACGGAGGACAAGGTGAAGGGTGGATTCCTTCTGGATGTTGT 989051 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || || || |||||||| || || || ||||||||||| ||||||||||| | Sbjct 989052 AGTCGCTCAAGGTGCGACCATCTTCGAGCTGCTTGCCAGCAAAGATGAGACGTTGCTGGT 989111 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGAT 140681 |||||||||| ||||| || |||||||| || ||| || || || ||||| | || || Sbjct 989112 CAGGAGGAATGCCTTCCTTGTCCTGAATCTT-GCTCTTGACGTTGTCAATGGTGTCCGAG 989170 Query 140682 GGTTCAACTTCAAGTGTAACTGTCTTTCCGGT 140713 | || || ||||| || | ||||| ||||| Sbjct 989171 GACTCGACCTCAAGGGTGATGGTCTTGCCGGT 989202 Score = 123 bits (136), Expect = 8e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||| ||||| | | || || | || |||||||||||||| || || || || || Sbjct 988768 CATACCGCCACGAAGACGCAGCACCAAGTGTAGAGTAGACTCTTTCTGGATGTTGTAGTC 988827 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 ||| | || || ||||| ||||| || || || || ||||| || |||||||| || || Sbjct 988828 AGACAGAGTACGACCATCCTCAAGCTGCTTGCCGGCGAAGATCAGGCGTTGCTGGTCGGG 988887 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || |||||||| ||| || ||||| || || | ||||||| || Sbjct 988888 TGGGATGCCCTCCTTGTCCTGAATCTTACTCTTGACATTGTCGATGGTGTCAGATGACTC 988947 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || | ||||| || || || || || || || || ||||| Sbjct 988948 GACCTCGAGAGTGATGGTCTTGCCAGTGAGAGTCTTGACGAAGATTTGCAT 988998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515251856740193