Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialophora_20attae_20[genbank_20GCA_5F001299255.1_202015-09-25] 131 sequences; 30,363,635 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq2 233 2e-56 seq23 86.0 7e-12 >seq2 Length=1003996 Score = 233 bits (258), Expect = 2e-56 Identities = 421/610 (69%), Gaps = 4/610 (1%) Strand=Plus/Plus Query 53174 GAGACGCCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACG 53233 |||| |||||| | | || ||||| ||||| | || ||||||||||||||| | Sbjct 556127 GAGAGACCTCAGCACATGTTGATGCGTGTCGCTGTTGGCATCCACGGTGACGACGTTGAG 556186 Query 53234 CGTGTCCGTGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACC 53293 | | ||||| ||| || | || ||| ||| ||| || |||||| | ||||| Sbjct 556187 AAGGCCATCGAGACCTACAACCTCTTGTCCCAGAAGACCTTCACACACGCCTCACCAACA 556246 Query 53294 CTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAG 53353 |||||| ||||| ||| ||||| || ||||| |||||||| | | |||||| Sbjct 556247 CTGTTCGCAGCTGGCACGCCCCACCCACAACTGTCGTCTTGCTTCCTCATCGACATGAAG 556306 Query 53354 GATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGG 53413 ||| || || ||||||||||| || |||||| |||||| ||||| ||| | Sbjct 556307 TCGGACAGCATTGATGGCATCTACGATACTCTCAAGACATGTGCCATGATCTCAAAGAGT 556366 Query 53414 TCGGGTGGTATCGGTATCCACTGCTCGAA-CGTCCGTGCGAACGGCACACCAATCAAGGG 53472 | |||||| | ||| || || |||| | ||||||| | ||| | || ||| Sbjct 556367 GCTGGTGGTGTTGGTCTCAAC-GCTCACTGCATCCGTGCCACTGGCTCCTACATTGCGGG 556425 Query 53473 GACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCG 53532 || ||||| | || |||| || | || ||||| | |||||||||||||| || || Sbjct 556426 CACAAACGGTACCTCCAATGGCCTCATTCCCATGCTGAGAGTCTTCAACAACACTGCTCG 556485 Query 53533 GTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTG 53592 || || | || ||||| ||||| ||| | || ||| | ||||||||||| || Sbjct 556486 CTATGTTGATCAAGGTGGCAACAAGCGTCCGGGTGCATTTGCCGTGTACCTCGAGCCATG 556545 Query 53593 GCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCG 53652 |||||| || || | ||||||||| | || || ||| || || | |||||| | || Sbjct 556546 GCACGCTGATATCTTCGAGTTTCTCAACCTACGCAAGAACCACGGCAAGGAAGAGGTCCG 556605 Query 53653 CTGCCGTGACCTGTT-TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGA 53711 | || |||||||| ||| ||| |||||| || || | |||||||| ||||||| Sbjct 556606 CGCTCGAGACCTGTTCTACGGCT-TGTGGACGCCTGATTTGTTCATGCAGCGTGTGGAGA 556664 Query 53712 AGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACG 53771 || || | || ||| ||||||||||| ||||||||||| || || | ||| |||| Sbjct 556665 AGAACCAAGATTGGACACTGATGTGCCCAAACGAGTGCCCAGGTCTAGCTGATGTGTACG 556724 Query 53772 GTGAGGAGTT 53781 | || ||||| Sbjct 556725 GCGAAGAGTT 556734 Score = 116 bits (128), Expect = 4e-21 Identities = 298/446 (67%), Gaps = 7/446 (2%) Strand=Plus/Plus Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543 |||||||| ||||| |||| || ||||| || || || || | |||||| |||| ||| Sbjct 557417 CGCAACTCACTGCTGCTGGCTCCCATGCCTACAGCCTCAACATCCCAGATCTTGGGTAAC 557476 Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAG 55603 || ||| |||||||| ||||| ||||||||||| ||||| || || || ||| Sbjct 557477 AATGAGTGCTTCGAGCCTTACACATCCAACATCTACTCTCGCCGAGTTCTTGCTGGCGAG 557536 Query 55604 TTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACCCG 55663 || | | ||| || ||||||||||| | || | |||| Sbjct 557537 TTCCAGGTTGTTAACCCCTGGCTGCTCAAGGACCTGGTCGATCTCGGCTTGTGGTCAGAC 557596 Query 55664 CAGATCAAGA--CGGATATTGTGCGGAACGGGGGGTCCGTCCAGAATCTGG-AGATTCCT 55720 | || |||| || || | ||| || || || || |||||||| || | | | Sbjct 557597 AACATGAAGAACCGCATCAT-TGCTGAG-GGCGGCTCTATCCAGAATGTGCCAAACGTCC 557654 Query 55721 CTGC-GTC-TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTG 55778 | || | | |||||| ||||| ||| ||||||||||| |||| | | | | Sbjct 557655 CGGCTGACATCAAGGCACTTTACAAGACAGTGTGGGAGATCTCACAACGTACTGTTCTGC 557714 Query 55779 ACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGG 55838 | ||| |||||| |||||||| | |||||| ||||| ||||| || |||||| | || Sbjct 557715 AGATGGCTGCTGACCGTGGTGCCTTCATCGATCAGTCTCAGTCACTCAACATCCACTTGA 557774 Query 55839 AGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCA 55898 || | || | ||| |||| | | | |||||||| || ||||||| ||| |||| Sbjct 557775 AGGAGCCGACGATGGGCAAGATTACCAGCATGCACTTCGCTGGCTGGAAGATGGGTCTCA 557834 Query 55899 AGACGGGTATGTACTATCTGCGGACC 55924 |||| || |||||||| || || ||| Sbjct 557835 AGACTGGCATGTACTACCTCCGTACC 557860 >seq23 Length=959784 Score = 86.0 bits (94), Expect = 7e-12 Identities = 125/174 (72%), Gaps = 2/174 (1%) Strand=Plus/Minus Query 152080 CCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCC 152139 || || | ||| ||||||||||| || |||| ||||||| || ||||| ||||| ||| Sbjct 340643 CCGAAGTTTCCTGAGGGCTCGAGAAGATTGATGTTGTTGCTTCCGACGAAGTTCTGCGCC 340584 Query 152140 AAATTCACAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCG 152199 | || ||||||| ||| || || || ||||| ||||| || ||| | || | Sbjct 340583 AGGCCGACGATCGTGCTCTGGAGTGACGTCTCGCCGTGATGATAGGCTGTCATC-CCTAG 340525 Query 152200 ATGTAT-CCCGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAG 152252 | || || || |||| | | |||||||||||| | | || ||||||||||| Sbjct 340524 AACAATACCAGCGAACTCCACGACCTTCATGTCCTTTCTGAGATTCTTCTTGAG 340471 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215103933800