Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialophora_20attae_20[genbank_20GCA_5F001299255.1_202015-09-25] 131 sequences; 30,363,635 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq2 221 1e-52 seq46 170 2e-37 seq57 107 2e-18 >seq2 Length=1003996 Score = 221 bits (244), Expect = 1e-52 Identities = 586/887 (66%), Gaps = 31/887 (3%) Strand=Plus/Minus Query 80887 ACAAATGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTA 80946 || ||||| || || || || |||| ||||| || || ||||| || | | | || Sbjct 556998 ACGAATGCTGGCAGCGACAAAGAAGCCAAGTTGCAGACAGCGACCTCATCCGGAGCAGTG 556939 Query 80947 AACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTT 81006 |||||| ||| || |||||||| || || | || || || |||||||||||||| Sbjct 556938 TACTCGATGATCTCAGTGCACAAGTTGGAGCTCCGGATGGTGCCAAGGTTTTTCTGGTTG 556879 Query 81007 GACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGAC 81066 |||||| ||||||||| ||||||||| |||||| ||||| ||||| ||| ||| | | Sbjct 556878 GACTTGCGGTTGCAAGCATCCTTGTAGAGCATGTATGGGGTGCCGGTTTCGGTCTGAGCC 556819 Query 81067 TTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGA----CCACCTTGCGGAATTTGCCTTC 81122 | ||| ||||||| ||| | || | || |||| | |||| | | ||||| Sbjct 556818 TCGAGAATGGCGTACCAGAGCTTTTGTGCTTTGATGGTCGACCTACCACGA----CCTTC 556763 Query 81123 GGCCACATACTTGGCGTAAGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGG 81182 | | || ||| ||| | ||||||| | |||| | |||| || |||| Sbjct 556762 TTGCTCGTATCTGGTGTACAGAGCCTCGAACTCTTCGCCGTACACATCAGCTAGACCTGG 556703 Query 81183 GCACTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGC 81242 ||||||||| ||||||||||| ||| || || ||||| ||| || |||||| Sbjct 556702 GCACTCGTTTGGGCACATCAGTGTCCAATCTTGGTTCTTCTCCACACGCTGCATGAACAA 556643 Query 81243 GTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCG--CCTCCTCATCACCCTGG 81300 ||||| |||| | | || ||||||||| || |||||| |||| || | || ||| Sbjct 556642 ATCAGGCGTCCACAAGCCGTAGAACAGGTCTCG--AGCGCGGACCTCTTCCTTGCCGTGG 556585 Query 81301 TTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGC- 81359 || ||| | | |||||| || | ||| || || ||||||||||| || |||||||| Sbjct 556584 TTCTTGCGTAGGTTGAGAAACTCGAAGATATCAGCGTGCCATGGCTCGAGGTACACGGCA 556525 Query 81360 GATCGACCC-----CTTGCGACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAAT 81414 || |||| |||| |||||| || | || || || ||||| ||| || Sbjct 556524 AATGCACCCGGACGCTTG---TTGCCACCTTGATCAACATAGCGAGCAGTGTTGTTGAAG 556468 Query 81415 ACACGCAACATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCC 81474 || | || ||| || |||| |||| || |||||| || ||| | || || || Sbjct 556467 ACTCTCAGCATGGGAATGAGGCCATTGGAGGTACCGTTTGTGCCCGCAATGTAGGAGCCA 556408 Query 81475 TTGGCGCGCACCTTGC--TGA---TTGAAAGACCGATGCCACCTGACCACTTTGAAATCT 81529 |||| || | ||| ||| ||| ||||| | ||||| | | |||||| ||| Sbjct 556407 GTGGCACGGA---TGCAGTGAGCGTTG--AGACCAACACCACCAGCACTCTTTGAGATCA 556353 Query 81530 GAGCACACCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCA 81589 ||||| || | || || || || || || ||||| || |||||||| | | Sbjct 556352 TGGCACATGTCTTGAGAGTATCGTAGATGCCATCAATGCTGTCCGACTTCATGTCGATGA 556293 Query 81590 AGAAACAGCTTGACATCTGAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGT 81649 ||| || |||| || ||| | ||| || |||||||||||| | |||| Sbjct 556292 GGAAGCAAGACGACAGTTGTGGGTGGGGCGTGCCAGCTGCGAACAGTGTTGGTGAGGCGT 556233 Query 81650 GAATGAAATAACGGTTTGACATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCAC 81709 | |||| | |||| |||| ||||| || || | || ||||||| Sbjct 556232 GTGTGAAGGTCTTCTGGGACAAGAGGTTGTAGGTCTCGATGGCCTTCTCAACGTCGTCAC 556173 Query 81710 CGTGAATACCGATAGCTACACGCATAAACATGTACTGGGGCGTCTCG 81756 |||| || || | ||| |||||||| ||||||| ||| || ||||| Sbjct 556172 CGTGGATGCCAACAGCGACACGCATCAACATGTGCTGAGGTCTCTCG 556126 Score = 84.2 bits (92), Expect = 2e-11 Identities = 126/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 80038 GTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAA 80097 || || || ||||||||||| |||||||| ||| |||||||||| | |||||| Sbjct 557859 GTACGGAGGTAGTACATGCCAGTCTTGAGACCCATCTTCCAGCCAGCGAAGTGCATGCTG 557800 Query 80098 CTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGATG 80157 | | ||| | | || || | || || | |||||| || |||||||||||| |||| Sbjct 557799 GTAATCTTGCCCATCGTCGGCTCCTTCAAGTGGATGTTGAGTGACTGAGACTGATCGATG 557740 Query 80158 AAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCATACTGT 80216 || || ||||| || || ||||| | | || | ||||| || ||||| ||||| Sbjct 557739 AAGGCACCACGGTCAGCAGCCATCTGCAGAACAGTACGTTGTGAGATCTCCCACACTGT 557681 >seq46 Length=1539107 Score = 170 bits (188), Expect = 2e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| || || |||||||| || ||||| ||||| |||||| | Sbjct 988998 ATGCAAATCTTCGTCAAGACTCTCACTGGCAAGACCATCACTCTCGAGGTCGAGTCATCT 988939 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||| ||| ||||||||||||||||| || || || |||||| Sbjct 988938 GACACCATCGACAATGTCAAGAGTAAGATTCAGGACAAGGAGGGCATCCCACCCGACCAG 988879 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || || || || || || || ||||| || ||||||| |||||| || | ||||| || Sbjct 988878 CAACGCCTGATCTTCGCCGGCAAGCAGCTTGAGGATGGTCGTACTCTGTCTGACTACAAC 988819 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || || || ||||| || | || |||||||||| || || Sbjct 988818 ATCCAGAAAGAGTCTACTCTACACTTGGTGCTGCGTCTTCGTGGCGG 988772 Score = 161 bits (178), Expect = 1e-34 Identities = 161/206 (78%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 27428 TTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGG 27487 ||||||||||||| || || |||||||| ||||| || | ||||| || | ||| Sbjct 989204 TTACCGGCAAGACCATCACCCTTGAGGTCGAGTCCTCGGACACCATTGACAACGTCAAGA 989145 Query 27488 CTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTA 27547 || |||||||||||||| || |||||||| |||||||| ||||| || |||||||| | Sbjct 989144 GCAAGATTCAGGACAAGGAAGGCATTCCTCCTGACCAGCAACGTCTCATCTTTGCTGGCA 989085 Query 27548 AGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAATGTCCAAAAGGAATCCACTCTT 27606 |||| ||||| |||| ||| ||| | ||| ||||| || |||| ||||||||||| ||| Sbjct 989084 AGCAGCTCGAAGATGGTCGCACCTTGAGC-GACTACAACATCCAGAAGGAATCCACCCTT 989026 Query 27607 CATCTAGTCTTGCGTCTTCGCGGTGG 27632 || || ||| | ||||| || || || Sbjct 989025 CACCTTGTCCTCCGTCTCCGTGGCGG 989000 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || || ||||| ||||| || | || || || || Sbjct 988770 ATGCAGATCTTCGTCAAGACTCTCACAGGCAAAACTATCACGTTGGAAGTGGAATCGTCA 988711 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| ||||| || || |||||||||||||| || || || ||||| Sbjct 988710 GACACCATCGACAATGTGAAGAGCAAGATCCAGGACAAGGAGGGTATCCCACCTGACCAA 988651 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| | || || || || |||||| | || || | || || || |||| || || Sbjct 988650 CAGCGATTGATCTTCGCCGGCAAGCAATTGGAAGACGGACGAACGCTCTCAGATTACAAC 988591 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 | || ||||| |||||| || | || | || || || ||||| || Sbjct 988590 ATTCAGAAGGAGAGCACTCTGCACTTGGTGCTCCGCCTGCGTGGTGGTCA 988541 >seq57 Length=1510414 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 27499 GACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAG 27558 ||||||||||| || || || |||||||||||||| || || || || ||||| ||||| Sbjct 1446631 GACAAGGAGGGCATCCCACCCGACCAGCAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAA 1446690 Query 27559 GATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 || | ||| ||||| | |||||||| |||| ||||| || |||||||| | ||| | Sbjct 1446691 GACGGTCGCACCCTCTCCGACTATAACATCCAGAAGGAGTCGACTCTTCACTTGGTCCTT 1446750 Query 27619 CGTCTTCGCGGTGG 27632 ||||| || || || Sbjct 1446751 CGTCTGCGTGGCGG 1446764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570309466116720