Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialophora_20attae_20[genbank_20GCA_5F001299255.1_202015-09-25] 131 sequences; 30,363,635 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq46 176 1e-38 seq48 152 1e-31 seq57 102 2e-16 >seq46 Length=1539107 Score = 176 bits (194), Expect = 1e-38 Identities = 172/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || | ||| ||||| |||||||| |||||||| || || | || || Sbjct 988777 ACGAAGACGCAGCACCAAGTGTAGAGTAGACTCTTTCTGGATGTTGTAGTCAGACAGAGT 988836 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||| || ||||||||||| |||||||| |||||||| ||||| || || | || Sbjct 988837 ACGACCATCCTCAAGCTGCTTGCCGGCGAAGATCAGGCGTTGCTGGTCGGGTGGGATGCC 988896 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||||| ||||| || || || |||||||||||||| || |||||||| Sbjct 988897 CTCCTTGTCCTGAATCTTACTCTTGACATTGTCGATGGTGTCAGATGACTCGACCTCGAG 988956 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||| ||||| || ||||||||||| || || | ||||| Sbjct 988957 AGTGATGGTCTTGCCAGTGAGAGTCTTGACGAAGATTTGCAT 988998 Score = 163 bits (180), Expect = 7e-35 Identities = 151/189 (80%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGGTCCTTCCATC 210961 |||||||||||||| ||||| || || |||||||| || || | ||| ||| | ||||| Sbjct 989015 AGGACAAGGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGCTCAA-GGTGCGACCATC 989073 Query 210962 TTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021 ||| ||||||||||| || ||||| || ||||| ||||||||||||| ||||||||||| Sbjct 989074 TTCGAGCTGCTTGCCAGCAAAGATGAGACGTTGCTGGTCAGGAGGAATGCCTTCCTTGTC 989133 Query 211022 CTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGT 211081 ||| ||||| || ||||| || |||||||| ||| || ||||| || ||||| || Sbjct 989134 CTGAATCTTGCTCTTGACGTTGTCAATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGT 989193 Query 211082 CTTTCCCGT 211090 ||| || || Sbjct 989194 CTTGCCGGT 989202 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| |||||| ||| || || ||||| ||||| | || || | ||| ||| Sbjct 988559 AGCACCAAGTGCAGAGTGCTCTCCTTCTGAATGTTGTAATCTGAGAGCGTTCGTCCGTCT 988618 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| |||||||| |||||||| | || ||||||||||| || | || ||||||||| Sbjct 988619 TCCAATTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCAGGTGGGATACCCTCCTTGTCC 988678 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| || ||||||||||| || ||| || || | ||||| || Sbjct 988679 TGGATCTTGCTCTTCACATTGTCGATGGTGTCTGACGATTCCACTTCCAACGTGATAGTT 988738 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||||||||| || || | |||||| Sbjct 988739 TTGCCTGTGAGAGTCTTGACGAAGATCTGCAT 988770 >seq48 Length=500340 Score = 152 bits (168), Expect = 1e-31 Identities = 141/179 (79%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 || ||||||||||| || | || || | ||||||||||| |||||||| |||||||| Sbjct 102272 TTCTGGATGTTATAGTCTGATAGAGTGCGGCCATCTTCCAGTTGCTTGCCGGCGAAGATC 102331 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 |||||||| |||||||| || | ||||||||||| |||||||| || || || || Sbjct 102332 AGGCGTTGCTGGTCAGGTGGGATGCCTTCCTTGTCTTGGATCTTGCTCTTGACATTGTCA 102391 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 |||||||| || || |||||||| ||||| ||||| |||||||| ||||| || || Sbjct 102392 ATGGTGTCTGAAGACTCCACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAA 102450 >seq57 Length=1510414 Score = 102 bits (112), Expect = 2e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | ||||||||| ||||| || ||||||||||| || | ||||| | || ||| Sbjct 1446749 AGGACCAAGTGAAGAGTCGACTCCTTCTGGATGTTATAGTCGGAGAGGGTGCGACCGTCT 1446690 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021 || ||||||||||| |||||||| || || || ||||| || || | || |||||||| Sbjct 1446689 TCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCGGGTGGGATGCCCTCCTTGTC 1446631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159150054435815