Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialophora_20attae_20[genbank_20GCA_5F001299255.1_202015-09-25] 131 sequences; 30,363,635 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq46 149 1e-30 seq48 120 7e-22 seq21 100 7e-16 >seq46 Length=1539107 Score = 149 bits (164), Expect = 1e-30 Identities = 166/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | ||| || | ||| ||||| || ||||| |||| ||||| || | || ||| Sbjct 988777 ACGAAGACGCAGCACCAAGTGTAGAGTAGACTCTTTCTGGATGTTGTAGTCAGACAGAGT 988836 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || |||||||| || |||||||| || ||||| |||||||| || || || Sbjct 988837 ACGACCATCCTCAAGCTGCTTGCCGGCGAAGATCAGGCGTTGCTGGTCGGGTGGGATGCC 988896 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| || ||||| ||| ||| ||||||||||| || | || || || | Sbjct 988897 CTCCTTGTCCTGAATCTTACTCTTGACATTGTCGATGGTGTCAGATGACTCGACCTCGAG 988956 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||||||| || | ||| || | ||| | |||||| Sbjct 988957 AGTGATGGTCTTGCCAGTGAGAGTCTTGACGAAGATTTGCAT 988998 Score = 145 bits (160), Expect = 2e-29 Identities = 145/188 (77%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||||||||| || |||||||| || |||| ||||| ||| ||| || | |||||| Sbjct 989015 AGGACAAGGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGACCATCT 989074 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||| ||||| || ||||| ||||| || ||||| ||||||||||| Sbjct 989075 TCGAGCTGCTTGCCAGCAAAGATGAGACGTTGCTGGTCAGGAGGAATGCCTTCCTTGTCC 989134 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| ||| || || |||||||| |||| || || || | ||||| ||| Sbjct 989135 TGAATCTTGCTCTTGACGTTGTCAATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTC 989194 Query 225682 TTGCCCGT 225689 ||||| || Sbjct 989195 TTGCCGGT 989202 Score = 140 bits (154), Expect = 8e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| |||||| || || || | |||||||| | | |||| || ||| Sbjct 988559 AGCACCAAGTGCAGAGTGCTCTCCTTCTGAATGTTGTAATCTGAGAGCGTTCGTCCGTCT 988618 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | ||||| || |||||||| | ||| |||||||| || || ||||| |||||||| Sbjct 988619 TCCAATTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCAGGTGGGATACCCTCCTTGTCC 988678 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||||||| |||||||||||||| | |||||| || |||||||| || Sbjct 988679 TGGATCTTGCTCTTCACATTGTCGATGGTGTCTGACGATTCCACTTCCAACGTGATAGTT 988738 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || | ||| || | ||| | ||||| Sbjct 988739 TTGCCTGTGAGAGTCTTGACGAAGATCTGCAT 988770 >seq48 Length=500340 Score = 120 bits (132), Expect = 7e-22 Identities = 107/134 (80%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 |||||||| || ||||| || |||||||| || ||||| ||||| || || || |||||| Sbjct 102302 CCATCTTCCAGTTGCTTGCCGGCGAAGATCAGGCGTTGCTGGTCAGGTGGGATGCCTTCC 102361 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 |||||||||||||| ||| ||| || ||||||||||| | ||||| || | ||| Sbjct 102362 TTGTCTTGGATCTTGCTCTTGACATTGTCAATGGTGTCTGAAGACTCCACCTCGAGGGTG 102421 Query 225676 ATCGTCTTGCCCGT 225689 || ||||||||||| Sbjct 102422 ATGGTCTTGCCCGT 102435 >seq21 Length=747 Score = 100 bits (110), Expect = 7e-16 Identities = 112/146 (77%), Gaps = 4/146 (3%) Strand=Plus/Minus Query 7566 TATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATGATAGG 7625 ||| || || ||||| || |||||||||| || ||| | |||||||| | ||||||||| Sbjct 747 TATAATAACAGCGCACGCGATTGTTATGATATTTTTTATGGTTATGCCTGCTATGATAGG 688 Query 7626 CGGTTTCGGAAATTGATTC-GTT-CCTTTAATGATTGGTGCTCCTGATATGGCTTTTCCA 7683 || || ||||| | ||| ||| |||||| || | || | || |||||||| || ||| Sbjct 687 AGGATTTGGAAACT--TTCTGTTACCTTTACTGGTAGGAGGACCAGATATGGCATTCCCA 630 Query 7684 AGGCTTAACAATATAAGTTTTTGATT 7709 || | || || |||||||||||||| Sbjct 629 AGATTAAATAACATAAGTTTTTGATT 604 Score = 84.2 bits (92), Expect = 5e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 370673 TCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGAT 370732 || |||||||| ||||||||||| | |||||| || | ||| ||||| || || |||| | Sbjct 190 TCTGGATGACCGAAAAATCAGAACAGATGTTGGTATAAGATTGGATCTCCACCTCCTGCT 249 Query 370733 GGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAAAAC 370773 |||||||| ||||| ||||||||||| ||||| || Sbjct 250 ACCTCAAAAAATGATGTATTGAAATTTCTATCCGTTAATAC 290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192529198410914