Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialophora_20attae_20[genbank_20GCA_5F001299255.1_202015-09-25] 131 sequences; 30,363,635 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq46 159 8e-34 seq48 147 5e-30 seq57 87.8 4e-12 >seq46 Length=1539107 Score = 159 bits (176), Expect = 8e-34 Identities = 159/205 (78%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || |||||||| || || || ||||| |||||||| || || ||| Sbjct 988995 CAAATCTTCGTCAAGACTCTCACTGGCAAGACCATCACTCTCGAGGTCGAGTCATCTGAC 988936 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| |||||||||||||| || || ||||| || ||||||||| Sbjct 988935 ACCATCGACAATGTCAAGAGTAAGATTCAGGACAAGGAGGGCATCCCACCCGACCAGCAA 988876 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || ||||| || ||||| | ||||| | || || ||| || Sbjct 988875 CGCCTGATCTTCGCCGGCAAGCAGCTTGAGGATGGTCGTACTCTGTCTGACTACAACATC 988816 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || ||||| || || || || |||| Sbjct 988815 CAGAAAGAGTCTACTCTACA-CTTG 988792 Score = 143 bits (158), Expect = 6e-29 Identities = 145/186 (78%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004 || || || || |||||||| ||||| || ||| |||||||| || |||||||| Sbjct 989202 ACCGGCAAGACCATCACCCTTGAGGTCGAGTCCTCGGACACCATTGACAACGTCAAGAGC 989143 Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 |||||||||||||| ||||| || ||||| ||||||||||| || ||||| || || || Sbjct 989142 AAGATTCAGGACAAGGAAGGCATTCCTCCTGACCAGCAACGTCTCATCTTTGCTGGCAAG 989083 Query 178065 CAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGTCCAAAAAGAATCAACACTGCA 178123 |||||||||||||| | || |||| ||| || ||| |||| || ||||| || || || Sbjct 989082 CAGCTCGAAGATGGTCGCAC-CTTGAGCGACTACAACATCCAGAAGGAATCCACCCTTCA 989024 Query 178124 TCTTGT 178129 ||||| Sbjct 989023 CCTTGT 989018 Score = 127 bits (140), Expect = 5e-24 Identities = 141/188 (75%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || ||||||||||| ||||| ||||| | || |||||| |||||| Sbjct 988767 CAGATCTTCGTCAAGACTCTCACAGGCAAAACTATCACGTTGGAAGTGGAATCGTCAGAC 988708 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || || || ||||| |||||||| || || ||||| || ||||| || Sbjct 988707 ACCATCGACAATGTGAAGAGCAAGATCCAGGACAAGGAGGGTATCCCACCTGACCAACAG 988648 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | ||||||||||| || || | ||||| ||| | || || | ||||| ||| | Sbjct 988647 CGATTGATCTTCGCCGGCAAGCAATTGGAAGACGGACGAACGCTCTCAGATTACAACATT 988588 Query 178104 CAAAAAGA 178111 || || || Sbjct 988587 CAGAAGGA 988580 >seq48 Length=500340 Score = 147 bits (162), Expect = 5e-30 Identities = 140/179 (78%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 177930 TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATC 177989 ||||| || || ||||| || || || ||||||||||||||||| ||||||||||| Sbjct 102450 TTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTGGAGTCTTCAGACACCATT 102391 Query 177990 GAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTT 178049 || || ||||| ||||| || ||||| ||||| ||||| || ||||||||||| || Sbjct 102390 GACAATGTCAAGAGCAAGATCCAAGACAAGGAAGGCATCCCACCTGACCAGCAACGCCTG 102331 Query 178050 ATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108 ||||||||||| || || || |||||||| | ||||| | || |||||| |||| || Sbjct 102330 ATCTTCGCCGGCAAGCAACTGGAAGATGGCCGCACTCTATCAGACTATAACATCCAGAA 102272 >seq57 Length=1510414 Score = 87.8 bits (96), Expect = 4e-12 Identities = 89/115 (77%), Gaps = 1/115 (1%) Strand=Plus/Plus Query 178014 GACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAA 178073 ||||| || || ||||| || |||||||| || || ||||||||||| || ||||||||| Sbjct 1446631 GACAAGGAGGGCATCCCACCCGACCAGCAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAA 1446690 Query 178074 GATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128 || || | || || |||| |||||| |||| || || || || || || |||| Sbjct 1446691 GACGGTCGCACCCTCTCCGACTATAACATCCAGAAGGAGTCGACTCTTCA-CTTG 1446744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203729179612414