Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialophora_20attae_20[genbank_20GCA_5F001299255.1_202015-09-25] 131 sequences; 30,363,635 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq46 143 2e-29 seq57 125 7e-24 seq48 96.9 3e-15 >seq46 Length=1539107 Score = 143 bits (158), Expect = 2e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | ||||| ||||| |||||||||||||||||||| || || ||| Sbjct 988544 CCACCACGCAGGCGGAGCACCAAGTGCAGAGTGCTCTCCTTCTGAATGTTGTAATCTGAG 988603 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || |||| || | |||||||||||||| |||| ||||||||||| | || Sbjct 988604 AGCGTTCGTCCGTCTTCCAATTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCAGGTGGG 988663 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||||||| ||| || |||| || | | | ||||| ||| ||||| Sbjct 988664 ATACCCTCCTTGTCCTGGATCTTGCTCTTC-ACATTGTCGATGGTGTCTGACGATTCCAC 988722 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| ||| || ||||| || || || ||||| ||||| |||||||| Sbjct 988723 TTCCAACGTGATAGTTTTGCCTGTGAGAGTCTTGACGAAGATCTGCAT 988770 Score = 111 bits (122), Expect = 1e-19 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || ||||| | ||||| || || || ||| ||||| ||||| ||||| || Sbjct 988772 CCGCCACGAAGACGCAGCACCAAGTGTAGAGTAGACTCTTTCTGGATGTTGTAGTCAGAC 988831 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || || ||||||||||||||||| |||||||| || ||||| | || Sbjct 988832 AGAGTACGACCATCCTCAAGCTGCTTGCCGGCGAAGATCAGGCGTTGCTGGTCGGGTGGG 988891 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCA 41813 | || |||||||||| || || ||| || | || | ||||| ||||| | Sbjct 988892 ATGCCCTCCTTGTCCTGAATCTTACTCTTGACATTGTCG--ATGGTGTCAGATGACTCGA 988949 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| | || || || || || || || ||||| ||||| || ||||| Sbjct 988950 CCTCGAGAGTGATGGTCTTGCCAGTGAGAGTCTTGACGAAGATTTGCAT 988998 Score = 86.0 bits (94), Expect = 6e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || ||||| | || || || || ||| |||||||| ||||| |||||| Sbjct 989000 CCGCCACGGAGACGGAGGACAAGGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGCTC 989059 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | |||||| | || |||||||||||||| || || || || || || ||||| | ||| Sbjct 989060 AAGGTGCGACCATCTTCGAGCTGCTTGCCAGCAAAGATGAGACGTTGCTGGTCAGGAGGA 989119 Query 41756 ACGCTCTCCTTGTCC 41770 | || ||||||||| Sbjct 989120 ATGCCTTCCTTGTCC 989134 >seq57 Length=1510414 Score = 125 bits (138), Expect = 7e-24 Identities = 110/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 41633 CCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCG 41692 || ||||| || ||||| | |||| || || || ||||||||| |||||||||||| Sbjct 1446767 CCACCGCCACGCAGACGAAGGACCAAGTGAAGAGTCGACTCCTTCTGGATGTTATAGTCG 1446708 Query 41693 GAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCG 41752 ||||||||||| |||| |||||||||||||||||||| || || ||||| ||||| | Sbjct 1446707 GAGAGGGTGCGACCGTCTTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCGGGT 1446648 Query 41753 GGAACGCTCTCCTTGTC 41769 || | || ||||||||| Sbjct 1446647 GGGATGCCCTCCTTGTC 1446631 >seq48 Length=500340 Score = 96.9 bits (106), Expect = 3e-15 Identities = 132/182 (73%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 ||||||| ||||||||||| || || ||||| | || || || |||||||||||||| | Sbjct 102270 CCTTCTGGATGTTATAGTCTGATAGAGTGCGGCCATCTTCCAGTTGCTTGCCGGCGAAGA 102329 Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG 41792 ||||||| || ||||| | || | || |||||||| ||| || ||| || | Sbjct 102330 TCAGGCGTTGCTGGTCAGGTGGGATGCCTTCCTTGTCTTGGATCTTGCTCTT-GACATTG 102388 Query 41793 AC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACG 41851 | | ||||| ||||||||||| | || || || || ||||| || ||||| ||| Sbjct 102389 TCAATGGTGTCTGAAGACTCCACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACG 102448 Query 41852 AA 41853 || Sbjct 102449 AA 102450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462303242977200