Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialophora_20verrucosa_20[genbank_20GCA_5F002099365.1_202017-04-18] 15 sequences; 35,456,005 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq8 196 6e-45 seq1 98.7 1e-15 >seq8 Length=1658097 Score = 196 bits (216), Expect = 6e-45 Identities = 394/575 (69%), Gaps = 26/575 (5%) Strand=Plus/Minus Query 54104 TTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTC 54163 |||||| | |||| ||||| | | | |||| |||||||| |||||||| |||| Sbjct 1350622 TTCTTTCTCAGATTCAGGAAATCGAAGACGTCAGCGTGCCACGGCTCCAAGTAGATGGCG 1350563 Query 54164 ATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACT 54223 | | | || || || ||||| || ||||| || | ||| | || ||||| || |||| Sbjct 1350562 AAAGCACCGGGTCGCTTGTTGCCGCCCTGGTCGACGTAGCGGGCCGTGTTGTTGAAAACA 1350503 Query 54224 CTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTG 54283 | |||||| ||||| | ||||| |||| |||||||| || | |||||| ||| | Sbjct 1350502 CGCAACATGGGAATGAGTCCATTTGATGTCCCATTGGTTCCTGCAATATAGGAGCCAGTT 1350443 Query 54284 GCACGAAT--ATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGC 54341 |||||||| | | ||||| |||| || || || || | || ||||| | || | Sbjct 1350442 GCACGAATGCAGTGAGCATTGA--GACCGATGCCACCAGCGGTCTTGGAGATCATGGCAC 1350385 Query 54342 ATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATG----TTAAGTAGA 54397 | || | ||| || ||||||||||| || ||||||||| ||||| | ||| || Sbjct 1350384 AGGTCTTGAGCGTGTCGTAGATGCCCTCGATGCTATCATCCTTCATGTCGATCAAGAAGC 1350325 Query 54398 AA----ACAGCTAGACATT-TGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAG 54452 || |||||| || || |||| ||||| ||||| || | || || || | Sbjct 1350324 AAGAGGACAGCT-GAGGTTGTGGT--------GTTCCGGCATTGAAGAGCGTGGGTGATG 1350274 Query 54453 CGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATC-C 54511 | || || || || || | || | || ||||| ||||| || || || ||||| Sbjct 1350273 CATGAGTGAAGCACTTCTGGGACATGAGGTTGTATGTCTCAATGGCCTTCTCAATATCAT 1350214 Query 54512 CATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTG 54571 || | || || || || || |||||||| | ||||||||| |||| ||| ||| |||| Sbjct 1350213 CACCG-TGGATGCCAACAGCCACACGCATAATCATGTGCTGTGGTCGTTCGGCGA-CTTG 1350156 Query 54572 -TTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGA 54630 ||| |||||||||| ||| ||||| || || || || || ||||| || | ||| Sbjct 1350155 CTTGCCGATTTTCAGCAGGTATGATTTCTCTAACGTCTTGAAGCCAAAGTATTGGTAGTT 1350096 Query 54631 AAAGTCTCGTTCGTAAATAATAACTGAGTTGAGTT 54665 ||||||| || || | ||| | ||||| |||| Sbjct 1350095 GAAGTCTCTGTCATAGACAATGGCCGAGTTCAGTT 1350061 >seq1 Length=4142182 Score = 98.7 bits (108), Expect = 1e-15 Identities = 214/320 (67%), Gaps = 3/320 (1%) Strand=Plus/Minus Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194 ||||| |||||| ||| | |||||| || | | || | ||| || ||||| ||||| Sbjct 2622337 CATGCAAAATCGGTGTGCATACCCTCATCACGAGAGATGAGTTCATTTGAAAAGGTGAGA 2622278 Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 24254 || ||||| || || | || ||||| || || || ||||||||||| || ||||| Sbjct 2622277 CCTGGCATCAGACCCTTGCTCTTGAGCCAGAAGATTGAAGCAAATGATCCGGAGAAGAAG 2622218 Query 24255 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGG---CGCTGTCATGT 24311 || || || || || || || |||| |||| || | || || | | ||| Sbjct 2622217 ATACCCTCGACGGCTGCGAAAGCAACCAGTCGTTGAGCGAAAGTGGACTCCTTATCAGAG 2622158 Query 24312 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTA 24371 ||||| | ||||||| ||||||||||| || || || || || || ||||||| Sbjct 2622157 ATCCATCTAAGAGCCCAGTCGGCCTTCTTCCGTATGCAGGGGATGGTGTCGATAGCATCG 2622098 Query 24372 AAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATT 24431 || || || | || || || ||| || || ||||| || || | || ||||| Sbjct 2622097 AACAGGTATGTCTTCTCTTTGGGATCCTTCACGTATGTGTCGATGAGGAGTGAGTACATC 2622038 Query 24432 TCCGAATGAATGTTTTCAAT 24451 || || || || || || || Sbjct 2622037 TCAGAGTGGATATTCTCCAT 2622018 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593721488677200