Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialophora_20verrucosa_20[genbank_20GCA_5F002099365.1_202017-04-18] 15 sequences; 35,456,005 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq8 196 6e-45 seq1 102 1e-16 >seq8 Length=1658097 Score = 196 bits (216), Expect = 6e-45 Identities = 384/563 (68%), Gaps = 6/563 (1%) Strand=Plus/Minus Query 63342 TTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCC 63401 |||||| | |||| ||||| | | | |||| |||||||| |||||||| ||||| Sbjct 1350622 TTCTTTCTCAGATTCAGGAAATCGAAGACGTCAGCGTGCCACGGCTCCAAGTAGATGGCG 1350563 Query 63402 ATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACT 63461 | | | || || || ||||| || ||||| || | ||| | || ||||| || |||| Sbjct 1350562 AAAGCACCGGGTCGCTTGTTGCCGCCCTGGTCGACGTAGCGGGCCGTGTTGTTGAAAACA 1350503 Query 63462 CTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTG 63521 | |||||| ||||| | || |||||| | |||||||| || | |||||| ||| | Sbjct 1350502 CGCAACATGGGAATGAGTCCATTTGATGTCCCATTGGTTCCTGCAATATAGGAGCCAGTT 1350443 Query 63522 GCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGC 63579 |||||||| | | ||||| |||| || || || || | || ||||| | || | Sbjct 1350442 GCACGAATGCAGTGAGCATTGA--GACCGATGCCACCAGCGGTCTTGGAGATCATGGCAC 1350385 Query 63580 ATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAAC 63639 | || | |||||| |||||||| || ||||||||||| |||||| | | || | Sbjct 1350384 AGGTCTTGAGCGTGTCGTAGATGCCCTCGATGCTATCATCCTTCATGTCGATCAAGAAGC 1350325 Query 63640 AGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAA 63699 | |||| || | | | ||||| ||||| || | || || || || || || | Sbjct 1350324 AAGAGGACAGCTGAGGTTGTGGTGTTCCGGCATTGAAGAGCGTGGGTGATGCATGAGTGA 1350265 Query 63700 ACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGA 63758 | || || | || | || ||||| |||||||| || || ||||| || | || Sbjct 1350264 AGCACTTCTGGGACATGAGGTTGTATGTCTCAATGGCCTTCTCAATATCATCACCG-TGG 1350206 Query 63759 ATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATT 63818 || || || || |||||||| | ||||||||| |||| ||| | | || ||| ||| Sbjct 1350205 ATGCCAACAGCCACACGCATAATCATGTGCTGTGGTCGTTCGGCGACTTGCTTGCCGATT 1350146 Query 63819 TTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGT 63878 |||| || ||| ||||| || || || || || ||||| || | ||| ||||||| Sbjct 1350145 TTCAGCAGGTATGATTTCTCTAACGTCTTGAAGCCAAAGTATTGGTAGTTGAAGTCTCTG 1350086 Query 63879 TCGTAAATAATAACCGAATTGAG 63901 || || | ||| |||| || || Sbjct 1350085 TCATAGACAATGGCCGAGTTCAG 1350063 >seq1 Length=4142182 Score = 102 bits (112), Expect = 1e-16 Identities = 215/320 (67%), Gaps = 3/320 (1%) Strand=Plus/Minus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 ||||| |||||| ||||| |||||| || | | || | ||| || ||||| ||||| Sbjct 2622337 CATGCAAAATCGGTGTGCATACCCTCATCACGAGAGATGAGTTCATTTGAAAAGGTGAGA 2622278 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 || ||||| || || | || ||||| || || ||||| ||||||||||| |||||| Sbjct 2622277 CCTGGCATCAGACCCTTGCTCTTGAGCCAGAAGATTGAAGCAAATGATCCGGAGAAGAAG 2622218 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CGCTGTCATGT 33758 || || || || || || || |||| |||| | | || || | | ||| Sbjct 2622217 ATACCCTCGACGGCTGCGAAAGCAACCAGTCGTTGAGCGAAAGTGGACTCCTTATCAGAG 2622158 Query 33759 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33818 ||||| | ||||||| ||||||||||| || || || || || || || |||| Sbjct 2622157 ATCCATCTAAGAGCCCAGTCGGCCTTCTTCCGTATGCAGGGGATGGTGTCGATAGCATCG 2622098 Query 33819 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 33878 || || || | || || || ||| || || || || ||||| | || ||||| Sbjct 2622097 AACAGGTATGTCTTCTCTTTGGGATCCTTCACGTATGTGTCGATGAGGAGTGAGTACATC 2622038 Query 33879 TCCGAATGAATGTTTTCAAT 33898 || || || || || || || Sbjct 2622037 TCAGAGTGGATATTCTCCAT 2622018 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629817481909200