Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialophora_20verrucosa_20[genbank_20GCA_5F002099365.1_202017-04-18] 15 sequences; 35,456,005 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq8 199 5e-46 seq1 107 3e-18 >seq8 Length=1658097 Score = 199 bits (220), Expect = 5e-46 Identities = 395/575 (69%), Gaps = 26/575 (5%) Strand=Plus/Minus Query 72097 TTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCC 72156 |||||| | |||| ||||| | | | |||| |||||||| |||||||| ||||| Sbjct 1350622 TTCTTTCTCAGATTCAGGAAATCGAAGACGTCAGCGTGCCACGGCTCCAAGTAGATGGCG 1350563 Query 72157 ATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACT 72216 | | | || || || ||||| || ||||| || | ||| | || ||||| || |||| Sbjct 1350562 AAAGCACCGGGTCGCTTGTTGCCGCCCTGGTCGACGTAGCGGGCCGTGTTGTTGAAAACA 1350503 Query 72217 CTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTG 72276 | |||||| ||||| | ||||| |||| |||||||| || | |||||| ||| | Sbjct 1350502 CGCAACATGGGAATGAGTCCATTTGATGTCCCATTGGTTCCTGCAATATAGGAGCCAGTT 1350443 Query 72277 GCACGAAT--ATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGC 72334 |||||||| | || ||||| |||| || || || || | || ||||| | || | Sbjct 1350442 GCACGAATGCAGTGAGCATTGA--GACCGATGCCACCAGCGGTCTTGGAGATCATGGCAC 1350385 Query 72335 ATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATG----TTAAGTAGA 72390 | || | ||| || ||||||||||| || ||||||||| ||||| | ||| || Sbjct 1350384 AGGTCTTGAGCGTGTCGTAGATGCCCTCGATGCTATCATCCTTCATGTCGATCAAGAAGC 1350325 Query 72391 AA----ACAGCTAGACATT-TGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAG 72445 || |||||| || || |||| ||||| ||||| || | || || || | Sbjct 1350324 AAGAGGACAGCT-GAGGTTGTGGT--------GTTCCGGCATTGAAGAGCGTGGGTGATG 1350274 Query 72446 CGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATC-C 72504 | || || || || || | |||| || ||||| |||||||| || || ||||| Sbjct 1350273 CATGAGTGAAGCACTTCTGGGACATGAGGTTGTATGTCTCAATGGCCTTCTCAATATCAT 1350214 Query 72505 CATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTG 72564 || | || || || || || |||||||| | ||| ||||| |||| ||| ||| |||| Sbjct 1350213 CACCG-TGGATGCCAACAGCCACACGCATAATCATGTGCTGTGGTCGTTCGGCGA-CTTG 1350156 Query 72565 -TTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGA 72623 || ||||||| || ||| ||||| || || || || || ||||| || | ||| Sbjct 1350155 CTTGCCGATTTTCAGCAGGTATGATTTCTCTAACGTCTTGAAGCCAAAGTATTGGTAGTT 1350096 Query 72624 AAAGTCTCGTTCGTAAATAATAACCGAATTGAGTT 72658 ||||||| || || | ||| |||| || |||| Sbjct 1350095 GAAGTCTCTGTCATAGACAATGGCCGAGTTCAGTT 1350061 >seq1 Length=4142182 Score = 107 bits (118), Expect = 3e-18 Identities = 216/320 (68%), Gaps = 3/320 (1%) Strand=Plus/Minus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 ||||| |||||| ||||| ||||||||| | | || | ||| || ||||| ||||| Sbjct 2622337 CATGCAAAATCGGTGTGCATACCCTCATCACGAGAGATGAGTTCATTTGAAAAGGTGAGA 2622278 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAG 42184 || ||||| || || | || ||||| || || || ||||||||||| || |||||| Sbjct 2622277 CCTGGCATCAGACCCTTGCTCTTGAGCCAGAAGATTGAAGCAAATGATCCGGAGAAGAAG 2622218 Query 42185 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CACTGTCATGT 42241 || || || || || || || |||| |||| | | || || | | ||| Sbjct 2622217 ATACCCTCGACGGCTGCGAAAGCAACCAGTCGTTGAGCGAAAGTGGACTCCTTATCAGAG 2622158 Query 42242 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 42301 ||||| | ||||||| ||||||||||| || || || || || || || |||| Sbjct 2622157 ATCCATCTAAGAGCCCAGTCGGCCTTCTTCCGTATGCAGGGGATGGTGTCGATAGCATCG 2622098 Query 42302 AAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATT 42361 || || || | || || || ||| || || ||||| ||||| | || ||||| Sbjct 2622097 AACAGGTATGTCTTCTCTTTGGGATCCTTCACGTATGTGTCGATGAGGAGTGAGTACATC 2622038 Query 42362 TCTGAATGAATGTTTTCAAT 42381 || || || || || || || Sbjct 2622037 TCAGAGTGGATATTCTCCAT 2622018 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671139074161400