Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialophora_20verrucosa_20[genbank_20GCA_5F002099365.1_202017-04-18] 15 sequences; 35,456,005 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq2 145 7e-30 seq5 93.3 4e-14 seq1 84.2 2e-11 >seq2 Length=3515922 Score = 145 bits (160), Expect = 7e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || || || | |||||||||||| || ||||||||||||||| Sbjct 2794694 CCACCTCGGAGACGGAGGACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAATCGCTC 2794753 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| ||||| || || ||| |||| | |||||||| || ||||| Sbjct 2794754 AAGGTGCGGCCATCCTCGAGCTGTTTACCGGCGAAGATGAGGCGCTGCTGATCAGGAGGA 2794813 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||| || ||||| | || | || ||| | ||||| | Sbjct 2794814 ATGCCTTCCTTGTCCTGGATCTTGCTCTTGACATTGTCGATGGTGTCGCTCGACTCAACC 2794873 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 |||| ||| | ||| || ||||| | ||| || ||||| ||||||||| Sbjct 2794874 TCGAGGGTGATGGTCTTGCCGGTCAAAGTCTTGACGAAGATCTGCATG 2794921 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||| | | || || | ||| | || || ||||| ||||||||||| || Sbjct 2794238 CCACCGCGAAGTCTGAGAACGAGATGGAGAGTGGATTCCTTCTGAATGTTGTAGTCTGAG 2794297 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || |||||| ||||||||||| ||| |||| || || ||||||||||| ||| Sbjct 2794298 AGAGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAATCGTTGCTGGTCCGGTGGG 2794357 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| ||| ||||| | || | ||||| | || |||| Sbjct 2794358 ATGCCCTCCTTGTCTTGGATCTTCGACTTGACGTTGTCAATCGTATCTGAAGATTCGACC 2794417 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | || || ||||| |||||||| ||||| |||||||| Sbjct 2794418 TCTAGTGTGATCGTCTTGCCGGTCAGAGTTTTGACGAAGATCTGCAT 2794464 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 131022 CAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTC 131081 |||||| ||||| | ||| |||||| ||||||||||| ||| || || || || Sbjct 2794024 CAGCACCAAATGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCGGACAGCGTTCGGCCATC 2794083 Query 131082 CTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTC 131141 ||| ||||||||||| ||| |||| | | ||||||||| || ||||| || || ||||| Sbjct 2794084 CTCAAGCTGCTTGCCAGCGAAGATCAGTCTCTGCTGGTCGGGTGGGATGCCCTCCTTGTC 2794143 Query 131142 GGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGT 131201 ||| || |||| | || | || || | | ||||| || | |||| || Sbjct 2794144 TTGGATCTTTGATTTGACATTGTCAATGGTGTCTGAGCTCTCGACTTCCAGCGTAATCGT 2794203 Query 131202 TTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || || || | ||| || || || || ||||| Sbjct 2794204 CTTGCCCGTCAAAGTCTTGACAAAGATTTGCAT 2794236 >seq5 Length=2445035 Score = 93.3 bits (102), Expect = 4e-14 Identities = 129/181 (71%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104 |||||||||| ||||| ||||||| || || ||| || || |||||||| ||| ||| Sbjct 1847862 CCTTTTGAATATTGTAGTCGCTCAACGTACGGCCGTCTTCGAGTTGCTTGCCGGCGAAGA 1847803 Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164 | | ||||||||||| || ||||| || || ||||| ||| || |||| | | Sbjct 1847802 TCAGTCGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTGGATCTTGGATTTGACATTGT 1847743 Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 | | || || | ||| |||| |||| ||| | ||| || || || || || || |||| Sbjct 1847742 CGATTGTGTCTGAGGATTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGA 1847683 Query 131225 A 131225 | Sbjct 1847682 A 1847682 >seq1 Length=4142182 Score = 84.2 bits (92), Expect = 2e-11 Identities = 267/408 (65%), Gaps = 17/408 (4%) Strand=Plus/Plus Query 46084 ATGCCGTGCGTGCGCAAGAAAACCGACTGGGCGATGAAGTGGATC----AACAGCAGCAC 46139 || || ||| | || ||||| |||||||||| | | |||||| | || || | Sbjct 2622114 ATCCCCTGCATACGGAAGAAGGCCGACTGGGCTCTTAGATGGATCTCTGATAAGGAGTCC 2622173 Query 46140 CGCGACTTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGG 46199 |||||||| | || |||| || || || || ||||| |||| || || || Sbjct 2622174 ----ACTTTCGCTCAACGACTGGTTGCTTTCGCAGCCGTCGAGGGTATCTTCTTCTCCGG 2622229 Query 46200 CAGTTTTGCCGCCATCTTTTACATCAAAACCAAGGGCATCATGCCCGGCCTGACGTTTAG 46259 ||||| | ||||| | |||| | |||||| | ||||| || || || ||| Sbjct 2622230 ATCATTTGCTTCAATCTTCTGGCTCAAGAGCAAGGGTCTGATGCCAGGTCTCACCTTTTC 2622289 Query 46260 CAACGAGCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCT-CTACTATA 46318 || || || || || || || ||||| |||| || || ||||| || || || || | Sbjct 2622290 AAATGAACTCATCTCTCGTGATGAGGGTATGCACACCGATTTTGCATGCCTACTCCTGCA 2622349 Query 46319 ACACTCGCGTGCACGACAAGCTTGCGCCCGACACCGTGCTGAGCATGT--TCAAGGAGGC 46376 ||| || | |||| |||| || || | | | |||| | || || || || Sbjct 2622350 ACA-TCTCAAGCAC---AAGCC--CGACCAAAAGCTCATTGAGAAGGTCATCGTCGAAGC 2622403 Query 46377 GGTGGCCATTGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAA 46436 || || ||||| || ||||| | || | || || || | | | ||||||||||||| Sbjct 2622404 AGTCGCTATTGAAAAAGAGTTCCTAACTGAGGCGCTCCCTGTCGGCTTGCTGGGCATGAA 2622463 Query 46437 CGCACAGTCAATGTGCGACTACATCGAGTTTGTAGCGGACCGACTGCT 46484 | | || |||||| | ||||| |||||||| || ||||| |||| Sbjct 2622464 CTCTAAGCTCATGTGCCAGTACATTGAGTTTGTCGCCGACCGTTTGCT 2622511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472012711497600