Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialophora_20verrucosa_20[genbank_20GCA_5F002099365.1_202017-04-18] 15 sequences; 35,456,005 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq2 136 3e-27 seq1 86.0 5e-12 >seq2 Length=3515922 Score = 136 bits (150), Expect = 3e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || ||||| || || || ||| | || || ||||| || | | | Sbjct 2794236 ATGCAAATCTTTGTCAAGACTTTGACGGGCAAGACGATTACGCTGGAAGTCGAGAGCTCA 2794177 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || ||||| ||| || |||||||||||||| || |||||||| || Sbjct 2794176 GACACCATTGACAATGTCAAATCAAAGATCCAAGACAAGGAGGGCATCCCACCCGACCAG 2794117 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || || || ||||| ||| | |||||| ||| || | ||||| |||||| Sbjct 2794116 CAGAGACTGATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGAACGCTGTCCGACTACAAC 2794057 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || || |||| | ||||| || || || | || || ||| Sbjct 2794056 ATTCAGAAGGAGAGCACCTTGCATTTGGTGCTGAGACTCCGTGGCGGT 2794009 Score = 134 bits (148), Expect = 1e-26 Identities = 148/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| || ||| | || || || || | || ||||| || || | | | Sbjct 2794692 ATGCAAATTTTTGTGAAGACTCTTACTGGCAAGACCATTACGCTTGAGGTTGAGTCGAGC 2794633 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| | |||| || |||||||||||||| || || || || ||||| Sbjct 2794632 GATACCATCGACAACGTCAAGAGCAAGATTCAAGACAAGGAAGGCATCCCCCCGGATCAG 2794573 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || |||||||| || || | || || ||||||| ||||||| |||||| Sbjct 2794572 CAACGTCTGATCTTTGCCGGAAAGCAACTTGAAGACGGCCGCACCCTCTCCGACTACAAC 2794513 Query 22399 ATTCAAAAAGAATCCAC 22415 || || |||||||| || Sbjct 2794512 ATCCAGAAAGAATCGAC 2794496 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || |||||| | ||||| || ||| |||| || || || ||| | | Sbjct 2794464 ATGCAGATCTTCGTCAAAACTCTGACCGGCAAGACGATCACACTAGAGGTCGAATCTTCA 2794405 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | ||| | |||| || || |||||||||||||| || ||||| || || Sbjct 2794404 GATACGATTGACAACGTCAAGTCGAAGATCCAAGACAAGGAGGGCATCCCACCGGACCAG 2794345 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| | || || |||||||| ||| | ||||| ||| || |||| || |||||| Sbjct 2794344 CAACGATTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGAACTCTCTCAGACTACAAC 2794285 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| || |||||||| | ||| | ||| | || | ||||| || Sbjct 2794284 ATTCAGAAGGAATCCACTCTCCATCTCGTTCTCAGACTTCGCGGTGG 2794238 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || ||||| ||||| || || |||| || || || || | | | Sbjct 2794920 ATGCAGATCTTCGTCAAGACTTTGACCGGCAAGACCATCACCCTCGAGGTTGAGTCGAGC 2794861 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || |||| || || || |||||||| || ||||| || ||||| Sbjct 2794860 GACACCATCGACAATGTCAAGAGCAAGATCCAGGACAAGGAAGGCATTCCTCCTGATCAG 2794801 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || ||||| |||||| | |||||| ||||||| | |||||||||| Sbjct 2794800 CAGCGCCTCATCTTCGCCGGTAAACAGCTCGAGGATGGCCGCACCTTGAGCGATTACAAC 2794741 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 || || || || || ||| | || || || Sbjct 2794740 ATCCAGAAGGAGTCGACCTTGCACTTGGT 2794712 >seq1 Length=4142182 Score = 86.0 bits (94), Expect = 5e-12 Identities = 116/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 117051 TTGGCGCGACGCATGATCGCTTTCGCCATTGTCGAAGGCATTTTCTTTTCAGGCAGTTTT 117110 || || | ||| || | |||||||| ||||| || || ||||| || || ||| Sbjct 2622177 TTCGCTCAACGACTGGTTGCTTTCGCAGCCGTCGAGGGTATCTTCTTCTCCGGATCATTT 2622236 Query 117111 GCTGCCATATTTTTTATCAAGACCAAAGGTCTAATGCCGGGTCTAACGTTTAGCAACGAA 117170 ||| | || || | |||||| ||| ||||| ||||| ||||| || ||| || ||| Sbjct 2622237 GCTTCAATCTTCTGGCTCAAGAGCAAGGGTCTGATGCCAGGTCTCACCTTTTCAAATGAA 2622296 Query 117171 TTAATATCGCGTGACGAAGGTTTACACACCGATTTTGCGTGC 117212 | || || ||||| || ||| | |||||||||||||| ||| Sbjct 2622297 CTCATCTCTCGTGATGAGGGTATGCACACCGATTTTGCATGC 2622338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419727923268475