Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialophora_20verrucosa_20[genbank_20GCA_5F002099365.1_202017-04-18] 15 sequences; 35,456,005 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq2 150 4e-31 seq5 111 4e-19 >seq2 Length=3515922 Score = 150 bits (166), Expect = 4e-31 Identities = 173/230 (75%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| || || | || |||||||| | || |||||| ||||| || ||||||| Sbjct 2794465 TCCACCACGAAGACGGAGGACGAGATGGAGAGTCGATTCTTTCTGGATGTTGTAGTCGGA 2794524 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 ||| ||||| |||||||| | ||| ||||| || ||||||||||| || ||| || Sbjct 2794525 GAGGGTGCGGCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAGACGTTGCTGATCCGGGGG 2794584 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTTTTCTATAGAATCGCTCGATTCTA 288424 ||| ||||| || || || || || ||| || ||||| || || | ||||||||| || | Sbjct 2794585 GATGCCTTCCTTGTCTTGAATCTT-GCTCTTGACGTTGTCGATGGTATCGCTCGACTCAA 2794643 Query 288425 CTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 | || ||||| || ||||| || || |||||||| || || || |||||| Sbjct 2794644 CCTCAAGCGTAATGGTCTTGCCAGTAAGAGTCTTCACAAAAATTTGCATT 2794693 Score = 147 bits (162), Expect = 5e-30 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||||||||| ||||| || |||||||| | ||| ||| || || || || ||||| | Sbjct 2794237 TCCACCGCGAAGTCTGAGAACGAGATGGAGAGTGGATTCCTTCTGAATGTTGTAGTCTGA 2794296 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 ||| || || ||||| || | || || || |||||||||| || || || ||| Sbjct 2794297 GAGAGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAATCGTTGCTGGTCCGGTGG 2794356 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 ||| || || || || ||||| |||| || ||||| || || | ||| ||||| || Sbjct 2794357 GATGCCCTCCTTGTCTTGGATCTTCGACTTGACGTTGTCAATCGTATCTGAAGATTCGAC 2794416 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || ||||||||||| ||||||||||| |||||||| ||||||||| Sbjct 2794417 CTCTAGTGTGATCGTCTTGCCGGTCAGAGTTTTGACGAAGATCTGCATT 2794465 Score = 123 bits (136), Expect = 6e-23 Identities = 144/192 (75%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || || ||| | ||||| || || || | ||||| || |||||| Sbjct 2794730 TCCTTCTGGATGTTGTAATCGCTCAAGGTGCGGCCATCCTCGAGCTGTTTACCGGCGAAG 2794789 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTT 288401 || || ||||| ||| | || || ||||| || |||||||| || ||| || || || Sbjct 2794790 ATGAGGCGCTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGGATCTT-GCTCTTGACATT 2794848 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || | |||||||| || || ||||| ||||| ||||| ||||||| ||||||||| Sbjct 2794849 GTCGATGGTGTCGCTCGACTCAACCTCGAGGGTGATGGTCTTGCCGGTCAAAGTCTTGAC 2794908 Query 288462 GAATATCTGCAT 288473 ||| |||||||| Sbjct 2794909 GAAGATCTGCAT 2794920 Score = 116 bits (128), Expect = 9e-21 Identities = 167/234 (71%), Gaps = 6/234 (3%) Strand=Plus/Plus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || || || |||||||| || || | ||| | ||||| || || || || || |||||| Sbjct 2794007 TGACCGCCACGGAGTCTCAGCACCAAATGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCG 2794066 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 | ||||| || || || || | || || || ||||||||||| | ||| || | Sbjct 2794067 GACAGCGTTCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATCAGTCTCTGCTGGTCGGGT 2794126 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGAT 288420 ||||| || || || || ||||| || | ||| || || || || | || |||| Sbjct 2794127 GGGATGCCCTCCTTGTCTTGGATCTTTGATTTGACATTGTCAATGGTGTCTGAGCTC--- 2794183 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || ||||| ||||| |||||||| || |||| ||||||||| || || |||||| Sbjct 2794184 TCGACTTCCAGCGTAATCGTCTTGCCCGTCAAAGTCTTGACAAAGATTTGCATT 2794237 >seq5 Length=2445035 Score = 111 bits (122), Expect = 4e-19 Identities = 132/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 ||||| ||||| |||||| | ||| || |||||||| | ||| || || ||||||||| Sbjct 1847860 TTTTGAATATTGTAGTCGCTCAACGTACGGCCGTCTTCGAGTTGCTTGCCGGCGAAGATC 1847801 Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCT 288405 || ||||| || | |||||| || || || || ||||| || | ||| || || || Sbjct 1847800 AGTCGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTGGATCTTGGATTTGACATTGTCG 1847741 Query 288406 ATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAA 288464 || | || ||||| || ||||| ||||| ||||| || || || ||||||||||| Sbjct 1847740 ATTGTGTCTGAGGATTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAA 1847682 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179654173285170