Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialophora_20verrucosa_20[genbank_20GCA_5F002099365.1_202017-04-18] 15 sequences; 35,456,005 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq2 132 1e-25 seq4 89.7 1e-12 seq5 84.2 5e-11 >seq2 Length=3515922 Score = 132 bits (146), Expect = 1e-25 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||| || ||||||||||| || || |||| ||||||||| | | || Sbjct 2794472 CGAAGACGGAGGACGAGATGGAGAGTCGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTG 2794531 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || ||||| || ||||||||||| ||||| ||||| ||||| ||||| || ||| Sbjct 2794532 CGGCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAGACGTTGCTGATCCGGGGGGATGCCT 2794591 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || |||||||| ||| ||| |||| ||| || | | || || || | | Sbjct 2794592 TCCTTGTCTTGAATCTTGCTCTTGACGTTGTCGATGGTATCGCTCGACTCAACCTCAAGC 2794651 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || ||||| |||||||||||||| Sbjct 2794652 GTAATGGTCTTGCCAGTAAGAGTCTTCACAAAAATTTG 2794689 Score = 114 bits (126), Expect = 3e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 |||||||| || || || |||||||| || ||||| || | ||||||||| | | ||| Sbjct 2794244 CGAAGTCTGAGAACGAGATGGAGAGTGGATTCCTTCTGAATGTTGTAGTCTGAGAGAGTT 2794303 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || || |||||||| ||||||||||| | || ||||||||||| || || Sbjct 2794304 CGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAATCGTTGCTGGTCCGGTGGGATGCCC 2794363 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || || ||||| ||| ||| || | || |||| | ||| || || | Sbjct 2794364 TCCTTGTCTTGGATCTTCGACTTGACGTTGTCAATCGTATCTGAAGATTCGACCTCTAGT 2794423 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||||||||| || || |||||||| || || || || Sbjct 2794424 GTGATCGTCTTGCCGGTCAGAGTTTTGACGAAGATCTG 2794461 Score = 111 bits (122), Expect = 4e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | ||| | ||||||||||| |||| |||||| || ||| || | ||||| Sbjct 2794709 AGGACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAATCGCTCAAGGTGCGGCCATCC 2794768 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || ||||| || |||||||||||||| |||||||| || ||| ||| ||||| ||| Sbjct 2794769 TCGAGCTGTTTACCGGCGAAGATGAGGCGCTGCTGATCAGGAGGAATGCCTTCCTTGTCC 2794828 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| || |||| |||||| | | || || || | ||||| ||| Sbjct 2794829 TGGATCTTGCTCTTGACATTGTCGATGGTGTCGCTCGACTCAACCTCGAGGGTGATGGTC 2794888 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | ||| || || || || || Sbjct 2794889 TTGCCGGTCAAAGTCTTGACGAAGATCTG 2794917 >seq4 Length=3044656 Score = 89.7 bits (98), Expect = 1e-12 Identities = 90/114 (79%), Gaps = 5/114 (4%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAG-- 199466 || || || ||||| ||||| | ||||||||||| |||||||||||||| | |||| Sbjct 2776728 CGGAGACTGAGGACCAGGTGAATGGTCGACTCCTTCTGGACGTTGTAGTC--CAAAAGCG 2776671 Query 199467 TCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAA 199520 | | || ||||| || ||||| ||||||||||| || || ||||||| ||||| Sbjct 2776670 TGCGGCCGTCTTCGAGTTGCTTGCCGGCGAAGATCAGGCGTTGCTGGT-CGGAA 2776618 >seq5 Length=2445035 Score = 84.2 bits (92), Expect = 5e-11 Identities = 127/181 (70%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499 ||||||| | |||||||| ||| || | || ||||| || ||||| |||||||||| Sbjct 1847862 CCTTTTGAATATTGTAGTCGCTCAACGTACGGCCGTCTTCGAGTTGCTTGCCGGCGAAGA 1847803 Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATT 199559 | || ||||||||||| || || || || || || ||||| || || | Sbjct 1847802 TCAGTCGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTGGATCTTGGATTTGACATTGT 1847743 Query 199560 CGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAA 199619 ||| ||||||| | ||| || || | ||||| ||||| |||||||| || || || | Sbjct 1847742 CGATTGTGTCTGAGGATTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGA 1847683 Query 199620 A 199620 | Sbjct 1847682 A 1847682 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178921373426005