Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phialophora_20verrucosa_20[genbank_20GCA_5F002099365.1_202017-04-18]
15 sequences; 35,456,005 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq2 138 1e-27
seq5 104 3e-17
seq4 86.0 7e-12
>seq2
Length=3515922
Score = 138 bits (152), Expect = 1e-27
Identities = 148/193 (77%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462
||||| || || |||||||| || ||||| || |||| ||||||||||||||||||||
Sbjct 2794274 TCCTTCTGAATGTTGTAGTCTGAGAGAGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAG 2794333
Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522
||||| || |||||||| | || | || ||||||||| ||||||| ||||| |||
Sbjct 2794334 ATCAATCGTTGCTGGTCCGGTGGGATGCCCTCCTTGTCTTGGATCTTCGACTTGA-CGTT 2794392
Query 46523 G-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | | ||| || ||||| || || | ||||| || ||||| ||||| ||||| ||
Sbjct 2794393 GTCAATCGTATCTGAAGATTCGACCTCTAGTGTGATCGTCTTGCCGGTCAGAGTTTTGAC 2794452
Query 46582 AAAGATTTGCATT 46594
||||| ||||||
Sbjct 2794453 GAAGATCTGCATT 2794465
Score = 136 bits (150), Expect = 4e-27
Identities = 161/217 (74%), Gaps = 6/217 (3%)
Strand=Plus/Plus
Query 46381 CAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTC 46440
|| ||||| |||||| || |||||||| || || ||||||||||| || || || | ||
Sbjct 2794024 CAGCACCAAATGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCGGACAGCGTTCGGCCATC 2794083
Query 46441 GTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 46500
|| ||||||||||| ||||| |||| | ||||||||||| || | || |||||||||
Sbjct 2794084 CTCAAGCTGCTTGCCAGCGAAGATCAGTCTCTGCTGGTCGGGTGGGATGCCCTCCTTGTC 2794143
Query 46501 CATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCCACCGTGAT 46557
|||||| |||| | | | ||||| |||| || || |||| ||| ||
Sbjct 2794144 TTGGATCTTTGATTTGACATTGTCAATGGTGTCTGAGCTC---TCGACTTCCAGCGTAAT 2794200
Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594
|| |||||||||| || || |||||||||||||||
Sbjct 2794201 CGTCTTGCCCGTCAAAGTCTTGACAAAGATTTGCATT 2794237
Score = 122 bits (134), Expect = 1e-22
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426
|| |||| | ||| | |||| ||||| || |||||| ||||| ||||| |||
Sbjct 2794694 CCACCTCGGAGACGGAGGACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAATCGCTC 2794753
Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486
| ||||| | || |||||||| || |||||||| || | ||||||||| || | ||
Sbjct 2794754 AAGGTGCGGCCATCCTCGAGCTGTTTACCGGCGAAGATGAGGCGCTGCTGATCAGGAGGA 2794813
Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546
| || ||||||||| |||||| |||||| | | | ||||||||||| || ||
Sbjct 2794814 ATGCCTTCCTTGTCCTGGATCTTGCTCTTGACATTGTCGATGGTGTCGCTCGACTCAACC 2794873
Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| | |||||||| ||||| |||| || || || ||||| |||||
Sbjct 2794874 TCGAGGGTGATGGTCTTGCCGGTCAAAGTCTTGACGAAGATCTGCAT 2794920
Score = 116 bits (128), Expect = 4e-21
Identities = 143/193 (74%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462
|| || ||||| ||||||||||| || ||||| |||| || || ||||| ||||| ||
Sbjct 2794502 TCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCTTCAAGTTGCTTTCCGGCAAAG 2794561
Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522
|||| || ||||| || | || | || |||||||| ||||| |||||| |||
Sbjct 2794562 ATCAGACGTTGCTGATCCGGGGGGATGCCTTCCTTGTCTTGAATCTTGCTCTTGA-CGTT 2794620
Query 46523 G-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | | || |||||||| || || || | ||| ||||| ||||| || || || || ||
Sbjct 2794621 GTCGATGGTATCGCTCGACTCAACCTCAAGCGTAATGGTCTTGCCAGTAAGAGTCTTCAC 2794680
Query 46582 AAAGATTTGCATT 46594
||| |||||||||
Sbjct 2794681 AAAAATTTGCATT 2794693
>seq5
Length=2445035
Score = 104 bits (114), Expect = 3e-17
Identities = 132/182 (73%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463
||||||| |||||||||||| | || || |||| ||||| |||||||||||||| |
Sbjct 1847862 CCTTTTGAATATTGTAGTCGCTCAACGTACGGCCGTCTTCGAGTTGCTTGCCGGCGAAGA 1847803
Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523
||| ||||||||||| | || | || ||||||||| |||||| |||| |
Sbjct 1847802 TCAGTCGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTGGATCTTGGATTTGACATTGT 1847743
Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAA 46583
| | ||||| ||||| || || | |||||||| |||||||| || || || || |
Sbjct 1847742 CGATTGTGTCTGAGGATTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGA 1847683
Query 46584 AG 46585
||
Sbjct 1847682 AG 1847681
>seq4
Length=3044656
Score = 86.0 bits (94), Expect = 7e-12
Identities = 77/97 (79%), Gaps = 0/97 (0%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| |||| |||||||| | || ||||| |||| ||||| ||||||||||||||
Sbjct 2776699 CTCCTTCTGGACGTTGTAGTCCAAAAGCGTGCGGCCGTCTTCGAGTTGCTTGCCGGCGAA 2776640
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498
|||| ||| |||||||||| || | || ||||||
Sbjct 2776639 GATCAGGCGTTGCTGGTCGGAAGGTATTCTTTCCTTG 2776603
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565238294017800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |