Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialophora_20verrucosa_20[genbank_20GCA_5F002099365.1_202017-04-18] 15 sequences; 35,456,005 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq2 138 1e-27 seq5 104 3e-17 seq4 86.0 7e-12 >seq2 Length=3515922 Score = 138 bits (152), Expect = 1e-27 Identities = 148/193 (77%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| || || |||||||| || ||||| || |||| |||||||||||||||||||| Sbjct 2794274 TCCTTCTGAATGTTGTAGTCTGAGAGAGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAG 2794333 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||| || |||||||| | || | || ||||||||| ||||||| ||||| ||| Sbjct 2794334 ATCAATCGTTGCTGGTCCGGTGGGATGCCCTCCTTGTCTTGGATCTTCGACTTGA-CGTT 2794392 Query 46523 G-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | ||| || ||||| || || | ||||| || ||||| ||||| ||||| || Sbjct 2794393 GTCAATCGTATCTGAAGATTCGACCTCTAGTGTGATCGTCTTGCCGGTCAGAGTTTTGAC 2794452 Query 46582 AAAGATTTGCATT 46594 ||||| |||||| Sbjct 2794453 GAAGATCTGCATT 2794465 Score = 136 bits (150), Expect = 4e-27 Identities = 161/217 (74%), Gaps = 6/217 (3%) Strand=Plus/Plus Query 46381 CAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTC 46440 || ||||| |||||| || |||||||| || || ||||||||||| || || || | || Sbjct 2794024 CAGCACCAAATGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCGGACAGCGTTCGGCCATC 2794083 Query 46441 GTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 46500 || ||||||||||| ||||| |||| | ||||||||||| || | || ||||||||| Sbjct 2794084 CTCAAGCTGCTTGCCAGCGAAGATCAGTCTCTGCTGGTCGGGTGGGATGCCCTCCTTGTC 2794143 Query 46501 CATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCCACCGTGAT 46557 |||||| |||| | | | ||||| |||| || || |||| ||| || Sbjct 2794144 TTGGATCTTTGATTTGACATTGTCAATGGTGTCTGAGCTC---TCGACTTCCAGCGTAAT 2794200 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 || |||||||||| || || ||||||||||||||| Sbjct 2794201 CGTCTTGCCCGTCAAAGTCTTGACAAAGATTTGCATT 2794237 Score = 122 bits (134), Expect = 1e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || |||| | ||| | |||| ||||| || |||||| ||||| ||||| ||| Sbjct 2794694 CCACCTCGGAGACGGAGGACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAATCGCTC 2794753 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | ||||| | || |||||||| || |||||||| || | ||||||||| || | || Sbjct 2794754 AAGGTGCGGCCATCCTCGAGCTGTTTACCGGCGAAGATGAGGCGCTGCTGATCAGGAGGA 2794813 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || ||||||||| |||||| |||||| | | | ||||||||||| || || Sbjct 2794814 ATGCCTTCCTTGTCCTGGATCTTGCTCTTGACATTGTCGATGGTGTCGCTCGACTCAACC 2794873 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | |||||||| ||||| |||| || || || ||||| ||||| Sbjct 2794874 TCGAGGGTGATGGTCTTGCCGGTCAAAGTCTTGACGAAGATCTGCAT 2794920 Score = 116 bits (128), Expect = 4e-21 Identities = 143/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 || || ||||| ||||||||||| || ||||| |||| || || ||||| ||||| || Sbjct 2794502 TCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCTTCAAGTTGCTTTCCGGCAAAG 2794561 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 |||| || ||||| || | || | || |||||||| ||||| |||||| ||| Sbjct 2794562 ATCAGACGTTGCTGATCCGGGGGGATGCCTTCCTTGTCTTGAATCTTGCTCTTGA-CGTT 2794620 Query 46523 G-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | || |||||||| || || || | ||| ||||| ||||| || || || || || Sbjct 2794621 GTCGATGGTATCGCTCGACTCAACCTCAAGCGTAATGGTCTTGCCAGTAAGAGTCTTCAC 2794680 Query 46582 AAAGATTTGCATT 46594 ||| ||||||||| Sbjct 2794681 AAAAATTTGCATT 2794693 >seq5 Length=2445035 Score = 104 bits (114), Expect = 3e-17 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 ||||||| |||||||||||| | || || |||| ||||| |||||||||||||| | Sbjct 1847862 CCTTTTGAATATTGTAGTCGCTCAACGTACGGCCGTCTTCGAGTTGCTTGCCGGCGAAGA 1847803 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 ||| ||||||||||| | || | || ||||||||| |||||| |||| | Sbjct 1847802 TCAGTCGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTGGATCTTGGATTTGACATTGT 1847743 Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAA 46583 | | ||||| ||||| || || | |||||||| |||||||| || || || || | Sbjct 1847742 CGATTGTGTCTGAGGATTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGA 1847683 Query 46584 AG 46585 || Sbjct 1847682 AG 1847681 >seq4 Length=3044656 Score = 86.0 bits (94), Expect = 7e-12 Identities = 77/97 (79%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| |||| |||||||| | || ||||| |||| ||||| |||||||||||||| Sbjct 2776699 CTCCTTCTGGACGTTGTAGTCCAAAAGCGTGCGGCCGTCTTCGAGTTGCTTGCCGGCGAA 2776640 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 |||| ||| |||||||||| || | || |||||| Sbjct 2776639 GATCAGGCGTTGCTGGTCGGAAGGTATTCTTTCCTTG 2776603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565238294017800