Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialophora_20verrucosa_20[genbank_20GCA_5F002099365.1_202017-04-18] 15 sequences; 35,456,005 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq2 125 5e-24 seq14 91.5 1e-13 >seq2 Length=3515922 Score = 125 bits (138), Expect = 5e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 ||||| | || | || ||||||||| | |||||||| || ||||| ||||| || || Sbjct 2794010 CCGCCACGGAGTCTCAGCACCAAATGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCGGAC 2794069 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || |||| | || || | |||||| || || || ||||||| ||| || || | || Sbjct 2794070 AGCGTTCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATCAGTCTCTGCTGGTCGGGTGGG 2794129 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | |||||||||||| |||||| ||| ||| | | | ||||| ||| || Sbjct 2794130 ATGCCCTCCTTGTCTTGGATCTTTGATTTGACATTGTCAATGGTGTCTGAGCTCTCGACT 2794189 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| ||||||||| || ||||||||||| || ||||| || ||||| Sbjct 2794190 TCCAGCGTAATCGTCTTGCCCGTCAAAGTCTTGACAAAGATTTGCAT 2794236 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 48563 ATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTG 48622 ||| || ||| || || ||||| ||||| || || ||| |||| |||| || | ||| Sbjct 2794261 ATGGAGAGTGGATTCCTTCTGAATGTTGTAGTCTGAGAGAGTTCGGCCGTCCTCGAGCTG 2794320 Query 48623 CTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTT 48682 ||| ||||| || |||| ||| || || |||| || | |||||||||||| ||||| Sbjct 2794321 CTTGCCGGCGAAGATCAATCGTTGCTGGTCCGGTGGGATGCCCTCCTTGTCTTGGATCTT 2794380 Query 48683 TTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGT 48742 || || | | | ||||| | || ||||| | || ||||| || || || Sbjct 2794381 CGACTTGACGTTGTCAATCGTATCTGAAGATTCGACCTCTAGTGTGATCGTCTTGCCGGT 2794440 Query 48743 CAAAGTTTTTACAAAAATCTGCAT 48766 || |||||| || || |||||||| Sbjct 2794441 CAGAGTTTTGACGAAGATCTGCAT 2794464 >seq14 Length=2335262 Score = 91.5 bits (100), Expect = 1e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 9132 GTCGGAATGATTGAACAGCACCACTCCCACGTTACCCCTGTAATCCTCATCGATCACACC 9191 ||||||||| |||||||||| ||| || | || | ||| || | ||||| || || Sbjct 1742258 GTCGGAATGGTTGAACAGCAACACCTTGACCTCGCCGCGGTAGTCGGCGTCGATGACCCC 1742199 Query 9192 AGCACCCACGTCGATGAAGTGCTTGACCGCTAGTCCAGAGCGGGGCGCGATTCGACCGTA 9251 || ||| |||||||||||||||| |||| || || || ||||||||||| || ||||| Sbjct 1742198 CGCGCCCGTGTCGATGAAGTGCTTGGCCGCCAGGCCCGACCGGGGCGCGATCCGGCCGTA 1742139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380937530359845